Pairwise Alignments

Query, 276 a.a., tolB protein from Agrobacterium fabrum C58

Subject, 433 a.a., tol-pal system beta propeller repeat protein TolB from Pseudomonas stutzeri RCH2

 Score = 62.8 bits (151), Expect = 1e-14
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 14/155 (9%)

Query: 117 WSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG 176
           +SPDG    +   +D   +IY MD+ S    RLT+    +  P +  DG+ IYF S R G
Sbjct: 251 FSPDGNRLAFVLSKDGNPEIYVMDLGSRQLQRLTNHYAIDTEPFWGADGQTIYFTSDRAG 310

Query: 177 QMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRD--LDVRVQL 234
           + Q+++ R+  +S ER+T    G++  +P  S D+   V        H +D   + +V  
Sbjct: 311 KPQVYKQRLGSNSAERVT--FVGNYNANPKLSADEKTLVMI------HRQDGYTNFKVAA 362

Query: 235 MDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAY 269
            D+  GN+  L D         SP  +P+G    Y
Sbjct: 363 QDLQRGNLRILSD----TSLDESPTVAPNGTMLIY 393



 Score = 36.6 bits (83), Expect = 1e-06
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 11/106 (10%)

Query: 159 PDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYD 218
           P YSPDGR I + S    + +I+   +D    E+IT+    +  P  SP G+++ FV   
Sbjct: 205 PRYSPDGRRIAYVSFEQKRPRIFVQHIDTGRREQITNFEGLNGAPAFSPDGNRLAFVL-- 262

Query: 219 ADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDG 264
                  +D +  + +MD+    ++ L + +        P W  DG
Sbjct: 263 ------SKDGNPEIYVMDLGSRQLQRLTNHY---AIDTEPFWGADG 299



 Score = 32.3 bits (72), Expect = 2e-05
 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 15/109 (13%)

Query: 166 RWIYFNSSRTG----QMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADV 221
           R +Y    R G    +  + R   DG+    +  S      P  SP G ++ +VS     
Sbjct: 164 RLLYVTVERLGGANTRYTLQRSDYDGARAVTLLQSREPILSPRYSPDGRRIAYVS----- 218

Query: 222 FDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYV 270
           F+  R    R+ +  +D G  E + +  G  G   +P +SPDG+  A+V
Sbjct: 219 FEQKRP---RIFVQHIDTGRREQITNFEGLNG---APAFSPDGNRLAFV 261



 Score = 27.7 bits (60), Expect = 5e-04
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 232 VQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 272
           +Q  D DG    TL      +  + SP +SPDG   AYV +
Sbjct: 182 LQRSDYDGARAVTLLQ---SREPILSPRYSPDGRRIAYVSF 219