Pairwise Alignments
Query, 276 a.a., tolB protein from Agrobacterium fabrum C58
Subject, 450 a.a., protein TolB from Vibrio cholerae E7946 ATCC 55056
Score = 62.0 bits (149), Expect = 2e-14
Identities = 30/100 (30%), Positives = 51/100 (51%)
Query: 117 WSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG 176
WSPDG++ Y ++ +IY M+I SG +LT N P +SPDG+ + S+TG
Sbjct: 227 WSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVLSKTG 286
Query: 177 QMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVS 216
+Q++ + + + +T + P P G ++F S
Sbjct: 287 NLQVYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTS 326
Score = 60.1 bits (144), Expect = 9e-14
Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 16/198 (8%)
Query: 74 SPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHG--WSPDGKSFTYCGIRD 131
SPDG A + G++ IY++ G +T + P + +SPDGK+ +
Sbjct: 228 SPDGQTLAYVS-FQNGQAEIYMMNIYSGKREKLT-SFPRHNGAPRFSPDGKTLALVLSKT 285
Query: 132 QVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE 191
+Y+MD+ + T +T G N P + PDG+ + F S R G+ QI++V + G +
Sbjct: 286 GNLQVYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSGGETK 345
Query: 192 RITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGG 251
R+T + +P G +V V+ F+ + D+ M + +TL D
Sbjct: 346 RLTWQGSQNLGGQITPDGKFLVMVNRSDSGFNLAKQ-DLETGAMQI---LTKTLLD---- 397
Query: 252 QGTMNSPNWSPDGDEFAY 269
SP+ +P+G Y
Sbjct: 398 ----ESPSIAPNGGMVIY 411
Score = 48.9 bits (115), Expect = 2e-10
Identities = 56/198 (28%), Positives = 90/198 (45%), Gaps = 12/198 (6%)
Query: 2 RSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGK--YLLLNSEGLL--YRLSLAGDPSPE 57
++ I + NI + K + P AP +SPDGK L+L+ G L Y + LA E
Sbjct: 243 QAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLATRRLTE 302
Query: 58 KVDTGFATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGG-TPRLMTKNLPSYWH 115
V +G + N + PDG +L SD+ GK IY + +GG T RL + +
Sbjct: 303 -VTSGRSN--NTEPFWHPDGKSLIFTSDR--GGKPQIYQVNLSGGETKRLTWQGSQNLGG 357
Query: 116 GWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRT 175
+PDGK D F++ D+++G LT ++ P +P+G + ++S
Sbjct: 358 QITPDGKFLVMVNRSDSGFNLAKQDLETGAMQILTK-TLLDESPSIAPNGGMVIYSSIYN 416
Query: 176 GQMQIWRVRVDGSSVERI 193
+ V +DG R+
Sbjct: 417 KANVLSMVSIDGRFKARL 434
Score = 43.5 bits (101), Expect = 8e-09
Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 8/159 (5%)
Query: 9 NIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEG----LLYRLSLAGDPSPEKVDTGFA 64
++ TR++ V P W PDGK L+ S+ +Y+++L+G + G
Sbjct: 294 DLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRLTWQGSQ 353
Query: 65 TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSF 124
+ I+PDG + ++ + G + TG +++TK L +P+G
Sbjct: 354 NLGGQ---ITPDGKFLVMVNRSDSGFNLAKQDLETGAM-QILTKTLLDESPSIAPNGGMV 409
Query: 125 TYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP 163
Y I ++ + + ID + RL GR P +SP
Sbjct: 410 IYSSIYNKANVLSMVSIDGRFKARLPATNGRVRAPAWSP 448
Score = 40.0 bits (92), Expect = 9e-08
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 159 PDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYD 218
P +SPDG+ + + S + GQ +I+ + + E++T + P SP G + V
Sbjct: 225 PAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVL-- 282
Query: 219 ADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAY 269
+ +++V MD+ L ++ G+ P W PDG +
Sbjct: 283 ------SKTGNLQVYTMDL---ATRRLTEVTSGRSNNTEPFWHPDGKSLIF 324
Score = 31.2 bits (69), Expect = 4e-05
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 192 RITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRD-LDVRVQLMDMDGGNVETLFDLFG 250
RI D Y + +G++ F++ A V + +D ++++ D DG N +
Sbjct: 167 RIADLVYEEL------TGERGAFLTRIAYVVVNDKDPYPYQLRIADYDGYNERLVLR--- 217
Query: 251 GQGTMNSPNWSPDGDEFAYVRY 272
+ + SP WSPDG AYV +
Sbjct: 218 SKQPLMSPAWSPDGQTLAYVSF 239