Pairwise Alignments

Query, 710 a.a., DNA gyrase subunit B from Agrobacterium fabrum C58

Subject, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

 Score =  435 bits (1119), Expect = e-126
 Identities = 273/644 (42%), Positives = 376/644 (58%), Gaps = 26/644 (4%)

Query: 69  SDDYGASSIRVLEGLEPVRMRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVH 128
           ++ Y A +I VL GLEPVR RPGMY   TD    +HL  EVIDNS+DEA+AG+A+ I+V 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVI 58

Query: 129 LDAEGFLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVS 188
           L A+  L V D+GRG+PV+ HP+    S +E+I+ KLHAGGKF  K Y+ SGGLHGVG+S
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPEEK-VSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 189 VVNALSDLLEVEVARNRKLYRQRFSRGAPIGGLEELGDVHNRR-GTRVRFHPDPQIFGDH 247
           VVNALS  +EV V R+ ++Y   F  G  +  L   G    R  GT V F PD + F D 
Sbjct: 118 VVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYF-DS 176

Query: 248 AKFEPARIFRMARSKAYLFGGVEIRWSCDPGMVPADGEIPEKAVFHFPGGLKDYLAATLG 307
             F  +R+    R+KA L  G+EI ++        D     +  + +  GLKDYLA  + 
Sbjct: 177 PNFSVSRLINNLRAKAVLCPGLEIIFT--------DKVNNNEHRWLYEDGLKDYLAEGVK 228

Query: 308 KEFTVTREIFSGRTEKTGGHGALEWAVTWY--GGDTQIHSYCNTIPTPEGGTHEAGFRIA 365
               +  E F+G  E T    A  WAV W   GG+    SY N IPT +GGTH  G R  
Sbjct: 229 GYTLLPEEPFTG--EFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQG 286

Query: 366 LTKGLKNYAELTQN-KRAREITTDDVMISAAGMLSVFIREPEFVGQTKDKLATVEAQRIV 424
           L   ++ + E      R  ++T +DV    A +LS+ +++P+F GQTK++L++ ++   V
Sbjct: 287 LLDAMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFV 346

Query: 425 ENALRDPFDHYLTGNPGEAAKLLDWVIERAEERLRRRKEKEVNRKTAVRKLRLPGKLADC 484
              ++D F  +L   P  A +L +  I  A  R+R    K+V RK       LPGKL DC
Sbjct: 347 SGVVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRA--SKKVVRKKIASGPALPGKLTDC 404

Query: 485 SQNTAENAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVGSASREKLSANQQIADL 544
           +       ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN    S +++ A+Q++ D+
Sbjct: 405 TVQDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464

Query: 545 IQALGCGTRTKYREEDLRYERIIIMTDADVDGAHIASLLITFFYQEMPELIRGNHLYLAV 604
             ALG    +    E LRY ++ I+ DAD DG HIA+LL   F +    L++  H+Y+A+
Sbjct: 465 SVALGIDPDSD-NLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAM 523

Query: 605 PPLYVIRQGAKSAYARDDAHRAELMETVFKGK-KVEIGRFKGLGEMMAAQLKETTMDPEK 663
           PPLY I  G +  YA DD  +  ++E + + K KV + RFKGLGEM   QL+ETTMDP  
Sbjct: 524 PPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNT 583

Query: 664 RTLLRVEIDDVDFEGTREAVDNLMGTK-ADARFRFIQERAAFAD 706
           R L+++ IDD   E T E +D L+G K AD R  ++Q     A+
Sbjct: 584 RRLVQLTIDDA--EATDEMMDMLLGKKRADDRRAWLQRNGDMAE 625