Pairwise Alignments

Query, 710 a.a., DNA gyrase subunit B from Agrobacterium fabrum C58

Subject, 805 a.a., DNA gyrase, B subunit (RefSeq) from Shewanella loihica PV-4

 Score =  439 bits (1128), Expect = e-127
 Identities = 251/568 (44%), Positives = 351/568 (61%), Gaps = 18/568 (3%)

Query: 68  SSDDYGASSIRVLEGLEPVRMRPGMYIGGTDE-KALHHLFAEVIDNSMDEAVAGHANFIE 126
           S + Y +SSI+VL+GL+ VR RPGMYIG TD+   LHH+  EV+DNS+DEA+AG+ N + 
Sbjct: 2   SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCNDVI 61

Query: 127 VHLDAEGFLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVG 186
           + + A+G ++V D+GRGIPV  HP+  G S  +VIMT LHAGGKFD  +Y+ SGGLHGVG
Sbjct: 62  ITIHADGSVSVKDDGRGIPVAIHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 187 VSVVNALSDLLEVEVARNRKLYRQRFSRGAPIGGLEELGDVHNRRGTRVRFHPDPQIFGD 246
           VSVVNALS+ L++ + R+ KLY Q ++ G P   + E+GD  N  GT +RF P  + F D
Sbjct: 121 VSVVNALSEKLKLTIRRDGKLYEQFYTMGEPDAPIAEIGDATNT-GTEIRFWPSAETFSD 179

Query: 247 HAKFEPARIFRMARSKAYLFGGVEIRWSCDPGMVPADGEIPEKAVFHFPGGLKDYLAATL 306
              F    + +  R  ++L  GV IR          D    +   F + GG+  ++    
Sbjct: 180 -TLFHFDILAKRVRELSFLNSGVGIRL--------IDERDNKDEFFKYEGGISAFVDYLN 230

Query: 307 GKEFTVTREIFSGRTEKTGGHGALEWAVTWYGG-DTQIHSYCNTIPTPEGGTHEAGFRIA 365
             +  V +EIF    E+  G   +E A+ W  G    I  + N IP  +GGTH AGFR A
Sbjct: 231 LNKTPVNKEIFHFVQEREDGI-TVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAA 289

Query: 366 LTKGLKNYAELTQ-NKRAREITT-DDVMISAAGMLSVFIREPEFVGQTKDKLATVEAQRI 423
           LT+ L +Y +    NK+ +   T DD       ++SV + +P+F  QTKDKL + E +  
Sbjct: 290 LTRNLNSYMDKEGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 349

Query: 424 VENALRDPFDHYLTGNPGEAAKLLDWVIERAEERLRRRKEKEVNRKTAVRKLR-LPGKLA 482
           VE  + +    YL  NP EA  ++  +I+ A  R   RK +E+ R+     L  LPGKLA
Sbjct: 350 VEQTMGEKLGDYLLENPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLA 409

Query: 483 DCSQNTAENAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVGSASREKLSANQQIA 542
           DC +     +E++IVEGDSAGGSAKQ RNR NQAILPL+GKILNV  A  +K+ ++Q++A
Sbjct: 410 DCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469

Query: 543 DLIQALGCGT-RTKYREEDLRYERIIIMTDADVDGAHIASLLITFFYQEMPELIRGNHLY 601
            LI ALGCG  R +Y  +  RY  I+IMTDADVDG+HI +LL+TFF+++MPELI   +++
Sbjct: 470 TLITALGCGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVF 529

Query: 602 LAVPPLYVIRQGAKSAYARDDAHRAELM 629
           +A PPLY +++G +  Y +DD    E +
Sbjct: 530 IAQPPLYKVKKGKQEQYLKDDPALTEYL 557



 Score = 55.1 bits (131), Expect = 1e-11
 Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 640 IGRFKGLGEMMAAQLKETTMDPEKRTLLRVEIDDVDFEGTREAVDNLMGTKADARFRFIQ 699
           I R+KGLGEM   QL ETTMDPE R +L+V I+D       +    LMG + + R  FI+
Sbjct: 737 IQRYKGLGEMNPEQLWETTMDPESRRMLKVTIEDA--IAADQLFTCLMGDQVEPRRDFIE 794

Query: 700 ERAAFADNLDI 710
             A    NLD+
Sbjct: 795 SNALNVANLDV 805