Pairwise Alignments

Query, 602 a.a., single-stranded-DNA-specific exonuclease from Agrobacterium fabrum C58

Subject, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

 Score =  259 bits (662), Expect = 2e-73
 Identities = 185/528 (35%), Positives = 270/528 (51%), Gaps = 28/528 (5%)

Query: 47  IPELIARVLAGRGVGVDDALAFLDPTIRSLMPDPHMLTDCEKAAERLVRAIETGEKVAIF 106
           I  L+ R+   RGV     +A L+   ++L      L   ++A E L  AI   +++ + 
Sbjct: 19  IDPLLRRLYLSRGVS---NVAQLEKAAKALHSFKQ-LHGIDRAVELLFAAIAEQKRIIVV 74

Query: 107 GDYDVDGAASSALTYRFLAHFGLTPEIY-IPDRIFEGYGPNPAAMQQLAANGATLIVTVD 165
           GD+D DGA SSAL+   L   G     Y +P+R  +GYG +P  + Q    GA +I+TVD
Sbjct: 75  GDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTVD 134

Query: 166 CGSTSHESLQAAKDAGTDVVVIDHHQVGTELPPAVALVNPNREDDLSGQGHLCAAGVVFL 225
            G +S E ++ AK  G  VVV DHH  G ELP   A+VNPN +        L   GV F 
Sbjct: 135 NGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAFY 194

Query: 226 VMVATLRLLKDRRNRQAFTLD------LLSLLDIVALATVCDVVPLKGLNRAYVVKGLIA 279
           +M+A   L    R +  F         L+ L+D+VAL TV DVVPL   NR  V +GL  
Sbjct: 195 LMMA---LCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQR 251

Query: 280 AR-HMNNAGLAALFKKAGLGG-PVTPYHFGFLIGPRINAGGRIGDAALGSRLLTIDDTTE 337
            R  +   G+ AL + A      +    FGF +GPRINA GR+ D + G  LL  ++   
Sbjct: 252 IRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHA 311

Query: 338 AEVIAEKLDELNRERQAMEAAMLAEAEA--EALYEYGDGSGAGVIVTARENWHPGIVGLL 395
           A  +A +LD LN+ R+ +E  M  EA A  E L    D      +V  + +WH G++G+L
Sbjct: 312 ARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGIL 371

Query: 396 ASRLKDRFRRPAFAIAFDPSGKGTGSGRSINGFDMGRMVRAAVET---GLLVKGGGHAMA 452
           ASR+K+++ RP  A A    GK  GS RS+ G  M R     ++T   G+++K GGHAMA
Sbjct: 372 ASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHM-RDALDKIDTQNPGIILKFGGHAMA 430

Query: 453 AGLTVERANLGKLRTFFEEAAAKTVNELVESSVLKIDGAIGASGATLQLVDQLEQAGPYG 512
           AGLT+E  N  +    F++   + ++E     ++  DG +     +L   + L   GP+G
Sbjct: 431 AGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWG 490

Query: 513 SGHSQPIFAVPAHRLRDVRLVGTAHVKITLEAM-----DGSRLDGIAF 555
               +P+F     ++   +LVG  H+K+ LE +         +DGIAF
Sbjct: 491 QAFPEPLFD-GEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAF 537