Pairwise Alignments

Query, 336 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 349 a.a., Dihydrouridine synthase TIM-barrel protein yjbN (NCBI) from Rhodospirillum rubrum S1H

 Score =  305 bits (780), Expect = 1e-87
 Identities = 158/324 (48%), Positives = 210/324 (64%), Gaps = 7/324 (2%)

Query: 10  EKIFAVAPMIDWTDTRCRFLHRQLSKRALLFTEMIVADAIIHGQREKLLGYHPQEHPVAL 69
           ++  +VAPM+DWTD   R+  RQ++KR LL+TEMI A A++H    + L +HP EHP+AL
Sbjct: 18  DRRLSVAPMMDWTDRHDRWFLRQITKRTLLYTEMITAQALLHADPGRFLDHHPDEHPLAL 77

Query: 70  QLGGSNPAKLAEAVRIAGDYGYDEINLNVGCPSDRVQSGTFGACLMREPEVVAQCISAMK 129
           QLGGS+P  LAEA R+A  +G+ EINLNVGCPSDRV SG FGACLM +P +VA+C+SAM 
Sbjct: 78  QLGGSDPRALAEATRLAAPFGFAEINLNVGCPSDRVSSGRFGACLMADPALVAECLSAMA 137

Query: 130 AVAAVPVTVKCRIGVDDQEPETVLPDFLARVVAAGADAVWVHARKAWLQGLSPKENREVP 189
             +  PVT+K RIG+DD +    L  F+ +V  +G   + VHARKAWL+GLSPKENRE+P
Sbjct: 138 EASNAPVTIKHRIGIDDLDSYDQLVGFVDQVARSGIATIIVHARKAWLKGLSPKENREIP 197

Query: 190 PLDYDLVYRMKRDNPDVFIGINGGIADLDQAGEHL-------KYVDGVMLGRAAYHNTSI 242
           PL +D+V+R+K D P + + +NGGI  L QA +HL         VDGVM+GRAAY    +
Sbjct: 198 PLRHDVVHRLKADFPGLEVILNGGITTLTQALDHLGSGDPAAPAVDGVMIGRAAYETPYM 257

Query: 243 LADVDHRIHGEEALQYDWMALRDTMMAYAADYIATGGRLNHVTRHMVGLFQGMPGARRFR 302
           LA  D  I GE         +   ++ Y     A G  +  +TRH++GLF G PGAR +R
Sbjct: 258 LAQADGLIFGEATPAPSRHEVALALLPYLDAMTARGEPVKRLTRHILGLFHGQPGARAYR 317

Query: 303 QILSSDATRPGAGPEVIEAAFAAI 326
           + L     RP A  +V+  A A I
Sbjct: 318 RHLGEAGVRPDATAQVLIDALAHI 341