Pairwise Alignments

Query, 973 a.a., ABC excinuclease subunit A from Agrobacterium fabrum C58

Subject, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

 Score = 1109 bits (2869), Expect = 0.0
 Identities = 564/959 (58%), Positives = 721/959 (75%), Gaps = 25/959 (2%)

Query: 7   ISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 66
           I +RGAR HNLK I+L +PR+KLIV+TGLSGSGKSSLAFDT+YAEGQRRYVESLSAYARQ
Sbjct: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63

Query: 67  FLEMMQKPDVDQIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGVPYSPAT 126
           FL +M+KPDVD I+GLSPAISIEQK+TS NPRSTVGT+TE+YDY+RLL+ARVG P  P  
Sbjct: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123

Query: 127 GLPIESQTVSQMVDRILAFEEGTRLYILAPIVRGRKGEYKKELAELMKKGFQRVKVDGQF 186
            +P+++QT+SQMVD++L   EG+++ +LA IV+ RKGE+ K L  L  +GF R ++DG+ 
Sbjct: 124 QVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDGET 183

Query: 187 YEIADVPALDKKYKHDIDVVVDRAVVRPDMAARLADSLETCLKLADGLAIAEFADKPLPP 246
            ++ D P L+   KH I+V+VDR  VR D+  RLA+S ET L+L+ G+ +        P 
Sbjct: 184 CDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVA------PM 237

Query: 247 EDTAAGGSANKSLNETHERVLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPSCDGLGS 306
           E                E  +FS  FACP  G+++ E+EPRLFSFNNP GACP+CDGLG 
Sbjct: 238 EGDG-------------EEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGV 284

Query: 307 QQKVDENLIVPEPARTLRDGAIAPWAKSSSPYYNQTLEALGKAFGFKLSSKWTDLSKEAQ 366
           QQ  D + ++ +   +L  GAI  W + +  YY Q L AL + + F + + +  LSK+ Q
Sbjct: 285 QQYFDPDRVIQDANLSLAQGAIRGWDQKNF-YYFQMLTALAEHYDFDVHTPFNKLSKKIQ 343

Query: 367 HAILQGTD-DKIEFNYQDGARSYKTVKN-FEGIVPNLERRWKETDSAWAREEIERYMSAA 424
             IL G+   +IEF Y +     +  K+ FEGI+ NLERR+++T+S   REE+ +Y+S  
Sbjct: 344 EIILHGSGRTEIEFKYINDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNK 403

Query: 425 PCPACAGYRLKPEALAVKINKLHIGEVTQMSIRKARDWFEVLPENLNAKQNEIAVRILKE 484
           PC +C G RLK EA  V IN   +  + ++SI  A  +F+ L   L  ++ +IA +++KE
Sbjct: 404 PCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQEL--KLEGQRAQIAEKVMKE 461

Query: 485 IRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQR 544
           I +RL+FL +VGL+YL+LSR++ TLSGGE+QRIRLASQIG+GL GV+YVLDEPSIGLHQR
Sbjct: 462 INDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQR 521

Query: 545 DNARLLETLKHLRDIGNTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAEGTPQDVMA 604
           DN RLL+TL HLR++GNTV+VVEHDEDAI  AD+V+DIGP AG+HGG V+AEG  ++++A
Sbjct: 522 DNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIA 581

Query: 605 NPKSLTGKYLSGELGVAVPAERRKPKKGREIKVFGARGNNLQNVTAAVPLGVFTAVTGVS 664
           NP SLTG+YLSG   +AVP +R      + +++ GA GNNL+NV  ++P+G+FT VTGVS
Sbjct: 582 NPNSLTGQYLSGVKKIAVPEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVS 641

Query: 665 GGGKSTFLIETLYKSAARRVMGAREI-PAEHDRIDGFEFIDKVIDIDQSPIGRTPRSNPA 723
           G GKST + +T +K A   + GA    PA +  I G E  DKVIDIDQSPIGRTPRSNPA
Sbjct: 642 GSGKSTLINDTFFKIAHTALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPA 701

Query: 724 TYTGAFTPIRDWFAGLPEAKARGYAPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVT 783
           TYTG FTPIR+ FAG  E+++RGY PGRFSFNV+GGRCEACQGDGVIK+EMHFLPDVYV 
Sbjct: 702 TYTGIFTPIRELFAGTQESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVP 761

Query: 784 CDVCHGKRYNRETLDVTFKGKSIADVLDMTVEEGVEFFAAVPAVRDKLQSLFDVGLGYIK 843
           CDVC GKRYNRETL+V +KGK+I +VLDMTVE+  EFF  VP +  KLQ+L DVGL YI+
Sbjct: 762 CDVCKGKRYNRETLEVRYKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIR 821

Query: 844 VGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFHDVNKLLEMLHALVEQG 903
           +GQ A TLSGGEAQRVKLA+ELSKR TG+TLYILDEPTTGLHFHD+ +LL +LH L + G
Sbjct: 822 LGQSATTLSGGEAQRVKLARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHG 881

Query: 904 NSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEVVATGTPEDIVKVERSYTGHFLKELLD 962
           N+VVVIEHNL+VIKTADWIID+GPEGG GGG ++A GTPED+ ++E S+T  FLK LL+
Sbjct: 882 NTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLLN 940



 Score = 60.5 bits (145), Expect = 5e-13
 Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 6/112 (5%)

Query: 5   KTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYA 64
           KT+ ++GA  +NLK +DL +P      +TG+SGSGKS+L  DT +         + +A  
Sbjct: 610 KTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTATP 669

Query: 65  RQFLEMMQKPDVDQIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFA 116
             +  +      D++      I I+Q    R PRS   T T I+  +R LFA
Sbjct: 670 APYRSIQGLEHFDKV------IDIDQSPIGRTPRSNPATYTGIFTPIRELFA 715



 Score = 60.1 bits (144), Expect = 7e-13
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 7/117 (5%)

Query: 634 EIKVFGARGNNLQNVTAAVPLGVFTAVTGVSGGGKSTFLIETLYKSAARRVMGAREIPA- 692
           +I+V GAR +NL+N+   +P      +TG+SG GKS+   +TLY    RR + +    A 
Sbjct: 3   KIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62

Query: 693 ------EHDRIDGFEFIDKVIDIDQSPIGRTPRSNPATYTGAFTPIRDWFAGLPEAK 743
                 E   +D  E +   I I+Q      PRS   T T  +  +R  +A + E +
Sbjct: 63  QFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPR 119