Pairwise Alignments

Query, 382 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 513 a.a., homocysteine biosynthesis protein from Methanococcus maripaludis S2

 Score = 49.3 bits (116), Expect = 2e-10
 Identities = 27/131 (20%), Positives = 62/131 (47%), Gaps = 22/131 (16%)

Query: 241 VMSRDVIGVAPDDSLRHAHALMHNHHFKALPVTNDKAEIVGIVTQTDFLEKASWRNGRPS 300
           ++SR V+  + + S+  A  ++  ++   LP+ ++  ++ GI+T  D             
Sbjct: 393 ILSRPVVVGSLNTSITQASRVLIENNINHLPIVDENGKLSGIITSWD------------- 439

Query: 301 IGFLQRLRLILSGASAPNDTVKDIMTSPVKTVLPETSIEEAIIRFAEEGLHYLPVIDAKG 360
                    I    +    ++ +IMT+ + +  P+ +I+ A  + +   +  LPV+D+  
Sbjct: 440 ---------IAKAMAQDKHSISEIMTTYIVSATPDETIDMAARKMSRNNISGLPVVDSNN 490

Query: 361 KMVGIVSQSDV 371
           K++G+VS  D+
Sbjct: 491 KVLGVVSAEDI 501



 Score = 48.9 bits (115), Expect = 3e-10
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 305 QRLRLILSGASAPNDT----VKDIMTSPVKTVLPETSIEEAIIRFAEEGLHYLPVIDAKG 360
           QRL  + S A  P       VKDI++ PV      TSI +A     E  +++LP++D  G
Sbjct: 370 QRLEPLKSAAPKPMKAKMKLVKDILSRPVVVGSLNTSITQASRVLIENNINHLPIVDENG 429

Query: 361 KMVGIVSQSDVMVAMLADK 379
           K+ GI++  D+  AM  DK
Sbjct: 430 KLSGIITSWDIAKAMAQDK 448



 Score = 33.9 bits (76), Expect = 1e-05
 Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 7/116 (6%)

Query: 186 PTPIQKIGFSSTDLDEVLKEYD----EVLDIDRDELETILRKTELRSYRRRALHLDCASV 241
           P  +  +  S T    VL E +     ++D +  +L  I+   ++     +  H   + +
Sbjct: 397 PVVVGSLNTSITQASRVLIENNINHLPIVD-ENGKLSGIITSWDIAKAMAQDKH-SISEI 454

Query: 242 MSRDVIGVAPDDSLRHAHALMHNHHFKALPVTNDKAEIVGIVTQTDFLEKASWRNG 297
           M+  ++   PD+++  A   M  ++   LPV +   +++G+V+  D + K   RNG
Sbjct: 455 MTTYIVSATPDETIDMAARKMSRNNISGLPVVDSNNKVLGVVSAED-ISKLIGRNG 509