Pairwise Alignments

Query, 906 a.a., DNA gyrase subunit A from Agrobacterium fabrum C58

Subject, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

 Score =  389 bits (999), Expect = e-112
 Identities = 248/697 (35%), Positives = 383/697 (54%), Gaps = 62/697 (8%)

Query: 4   SYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGKFHP 63
           +YL+Y+M VI+ RALP + DGLKPV RRI+Y MSELG+  + KY K AR  GDV+GK+HP
Sbjct: 22  AYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKYHP 81

Query: 64  HGNSAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPP--AAERYTECRLEKAAHSLLDD 121
           HG+SA Y+A+  MAQ +S R PL+DGQGN+G+ D DP   AA RYTE +L K A  LL +
Sbjct: 82  HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTEAKLSKFAEILLSE 140

Query: 122 LDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCVAL 181
           L + TVD++ N+DGT+QEP ++PA+ P++L+NG  GIAVGMAT+IPPHN+ EV D  + L
Sbjct: 141 LGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVREVADATIHL 200

Query: 182 IENPAIELPEMMQIIPGPDFPTGA-LIMGRSGIRSAYETGRGSVIMRGVATIEPMRGDRE 240
           I+NP   L ++MQ + GPDFPT A +I     +   Y +GRGS+ MR V   E       
Sbjct: 201 IDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRAVWCKE-----GS 255

Query: 241 QIIITEVPYQVNKASMIEKMAELVKEKRIEGISDLRDESDRQGYR--VVIELKRDANAEV 298
            I+IT +P+QV+ A ++E++A  ++ K++  + DLRDESD +     V++      + ++
Sbjct: 256 DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRIVIVPRSNRVDCDL 315

Query: 299 ILNQLYRYTPLQTSF--GCNMVALNGGKPEQMTLLDMLRAFVSFREDVVSRRTKYLLRKA 356
           ++N L+  T L+ SF    NM+ L+  +P+   L+ +L  ++SFR + V  R +Y L K 
Sbjct: 316 LMNHLFASTDLEKSFRVNLNMIGLD-NRPQVKGLVQILSEWISFRRETVRSRLQYRLDKV 374

Query: 357 RDRAHVLVGLAISVANIDEVIRVIRHAPDPASAREQLMTRRWPAQDVESLIRLIDDPRHR 416
             R H+L GL I+  N+DEVI +IR+  DP +    LM R                    
Sbjct: 375 LARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR-------------------- 411

Query: 417 INEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLDILSSRVRIQQI 476
                 ++L++ QA AIL+ +L  L  L   +I  E +++  E  +  ++L S  R+  +
Sbjct: 412 ------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNL 465

Query: 477 VKDELVSIRDEFGTPRRSQIV--EGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRA 534
           +K E+ +  D+FG  RRS +V  E    + + DL+  E + V +S  G+I+         
Sbjct: 466 LKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEKGWIRHAKGHDVDC 525

Query: 535 QRRGGKGRSGMATRDEDFVNRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTPQSKGKAL 594
           Q    K      T             ++   +F  S G  Y  +   LP  + + +G+ +
Sbjct: 526 QSLNYKAGDNYLTH--------ACGKSNQQAVFLGSDGRSYSLESHTLP--SARGQGEPI 575

Query: 595 INMLPLEPGERITTIMPLPEDETAWETLDVMFSTTRGTVRRNKLGDFVQVNRNGKIAMKL 654
              L +  G  I  ++ + E++  W     +  +  G     K  D +  NR+GK  + L
Sbjct: 576 TGRLNVAEGTTIRQVV-MGEEDQLW-----LVGSDAGYGFVCKGDDLLSKNRSGKALINL 629

Query: 655 DEEGDEIL-SVETCTDRDDVLLTTALGQCIRFPVDDV 690
            E  + +   V    D D++L  T  G+ + FP+ D+
Sbjct: 630 PENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDL 666