Pairwise Alignments

Query, 906 a.a., DNA gyrase subunit A from Agrobacterium fabrum C58

Subject, 858 a.a., DNA topoisomerase IV subunit A from Synechococcus elongatus PCC 7942

 Score =  463 bits (1192), Expect = e-134
 Identities = 237/508 (46%), Positives = 344/508 (67%), Gaps = 32/508 (6%)

Query: 1   MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGK 60
           MQRSYL+YAMSVIV RALPD RDGLKPV RRILY M ELG+  ++ + K ARV GDV+GK
Sbjct: 22  MQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRPFRKSARVVGDVLGK 81

Query: 61  FHPHGNSAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPPAAERYTECRLEKAAH-SLL 119
           +HPHG+ A+YDAL R+ QD+S R PL+ G GNFGSID DPPAA RYTE RL   +H +LL
Sbjct: 82  YHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSIDNDPPAAMRYTETRLAPVSHVALL 141

Query: 120 DDLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCV 179
           +++ +ETVDF  N+D + QEP V+PA+ P LL+NG  GIAVGMATNIPPHNL E++D  +
Sbjct: 142 EEIGEETVDFVANFDNSQQEPSVLPAQLPFLLLNGCSGIAVGMATNIPPHNLGEIVDALI 201

Query: 180 ALIENPAIELPEMMQIIPGPDFPTGALIMGRSGIRSAYETGRGSVIMRGVATIEPM---- 235
           ALI+ P +   ++++ +PGPDFPTG  ++G  GI  AY  GRGS+ +RG+A IE +    
Sbjct: 202 ALIDRPQLSDRDLLRYVPGPDFPTGGEVIGSQGILDAYLEGRGSIPVRGIARIEEIQPGK 261

Query: 236 -RGDREQIIITEVPYQVNKASMIEKMAELVKEKRIEGISDLRDESDRQGYRVVIELKRDA 294
            R  R  II+TE+PYQV+KA  IEK+A+LV + +++GI+D+RDESDR+G RVVIEL+RDA
Sbjct: 262 GRHRRPVIIVTELPYQVSKAGWIEKVADLVNDGKLQGIADIRDESDREGMRVVIELRRDA 321

Query: 295 NAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVSFREDVVSRRTKYLLR 354
            A+ +L QLY+ T LQ++FG  ++A+  G+P+Q++L  +L  F+SFRE  + RR  + L 
Sbjct: 322 QADKVLEQLYKRTALQSNFGAILLAIVEGQPQQLSLKQLLEQFLSFREGTLRRRYGHELE 381

Query: 355 KARDRAHVLVGLAISVANIDEVIRVIRHAPDPASAREQLMTRRWPAQDVESLIRLIDDPR 414
           +   R  +L GL  S++++D +I ++R +PD  +AR +L                     
Sbjct: 382 QTERRLMILEGLLRSLSDLDGLIEILRQSPDGGTARARLQVH------------------ 423

Query: 415 HRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLDILSSRVRIQ 474
                   ++L+E QA A+L + + R+T+L ++++  E   +  + +    +L  R  + 
Sbjct: 424 --------FDLNERQADAVLSMPMRRITSLEQEQLQQEAANLREQQARLQTLLGDRPTLL 475

Query: 475 QIVKDELVSIRDEFGTPRRSQIVEGGPD 502
           + +K +L  ++  FG+PRR+++ E  P+
Sbjct: 476 KALKKDLRDLKRRFGSPRRTRLPEIPPE 503



 Score = 39.7 bits (91), Expect = 8e-07
 Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 12/152 (7%)

Query: 468 SSRVRIQQIVKDEL-VSIRDEFGTPRRSQIVEGGPDMDDEDLIAREDMVVTVSHLGYIKR 526
           SS  R+ ++   EL ++ R   G PR  ++ EG   +    L + +D+++ VS LG +KR
Sbjct: 709 SSGGRLLRLSLSELPLASRISRGQPRLLRLREGEQPLGCLSLPSGQDLLL-VSTLGLVKR 767

Query: 527 VPLTTYRAQRRGGKGRSGMATRDE-DFVNRLFVANTHTPVLFFSSRGIVYKEKVWRLPIG 585
           +PL   R  R G  G +     D+ D +  L  A +    +F S + + ++  +  + + 
Sbjct: 768 LPLGLLRLCRAGDLGNNAFRFTDKRDRLIALLPAPSQGLAIFASDQRL-WQRSISTIAVT 826

Query: 586 TPQSKGKALINMLPLE--------PGERITTI 609
              ++G+ L N+   E         G+R+TT+
Sbjct: 827 GTDAEGQTLFNLRSTETLQSATTLEGDRVTTV 858



 Score = 29.3 bits (64), Expect = 0.001
 Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 770 LKAREEFVLTVSVKGFGKRSSSYDFRTSGRGGKGIRATDTAKTNEIGELVAAFPVEEGDQ 829
           L + E  +L +S +G  KR +  +        +G++    A+   I       P +E   
Sbjct: 650 LASEERSLLLLSSQGRVKRLALTELAEISN--RGLQLLKLAEEEIIQAACLCAPQQE--- 704

Query: 830 IMLVSDGGQLIRVPVNGIRIASRATKG 856
           ++L S GG+L+R+ ++ + +ASR ++G
Sbjct: 705 VLLGSSGGRLLRLSLSELPLASRISRG 731