Pairwise Alignments

Query, 499 a.a., penicillin-binding protein from Agrobacterium fabrum C58

Subject, 316 a.a., D-alanyl-D-alanine endopeptidase from Vibrio cholerae E7946 ATCC 55056

 Score = 92.8 bits (229), Expect = 2e-23
 Identities = 81/268 (30%), Positives = 128/268 (47%), Gaps = 26/268 (9%)

Query: 30  ALTLAAAFIAATSVQTAKADPKY----------AGIVIDAKSGKVLYGEDPDGLRYPASL 79
           +L +A    +A S  T KA  K           + +VID K+ +++Y  +PD ++  AS+
Sbjct: 16  SLIIAIPAHSADSSTTTKAGVKKTVKKQELSANSALVIDLKTNEIIYSNNPDAVKPIASV 75

Query: 80  TKMMTLYLTFEALNSGRISLDSRVTVSANAAKEPPSKLG-VRAGGSVTVEQAILALVTRS 138
           TK+MT  +T +A    ++ +D+++ ++   AKE       V+ G  ++ +  +L  +  S
Sbjct: 76  TKLMTAIVTLDA----KLPMDAKLPITIKDAKEMKGVHSRVKIGSEISRKDMLLLTLMSS 131

Query: 139 ANDMATALGEHLGGSEDRFARMMTAKARALGMTRTTYRNANGLPNTAQMTTARDQARLGI 198
            N  A +L  H  G    F + M AKA+ALGM  T +    GL +   ++TARD   L +
Sbjct: 132 ENRAAASLAHHYPGGYKAFIKAMNAKAKALGMKNTRFVEPTGL-SAKNVSTARDLVVL-L 189

Query: 199 ALRQHFPQYYGYFST--RTFNFGKQ----VIGNHNRLVGTVK-GVDGIKTGYTRAAGSNL 251
              + +P      +T  +T  F K        N NRLV      +D  KTG+T AAG  L
Sbjct: 190 KASKKYPLLGKLSATDKKTVTFSKPRYTLDFRNTNRLVHNDNWKIDLTKTGFTNAAGHCL 249

Query: 252 ATSAQLDGRSIVAVVLG--GRSSAARDA 277
               Q+  R +  VVL   G+ S   DA
Sbjct: 250 VMRTQMGRRQVAFVVLDTKGKLSPVGDA 277