Pairwise Alignments

Query, 390 a.a., penicillin binding protein from Agrobacterium fabrum C58

Subject, 390 a.a., Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) from Shewanella loihica PV-4

 Score =  181 bits (459), Expect = 3e-50
 Identities = 110/390 (28%), Positives = 193/390 (49%), Gaps = 6/390 (1%)

Query: 3   KAIHRSYRSAIVVAAFAFFSAGAAQSQT--APFIAKAEQAYMIDAETGTVLLSQNEDQSF 60
           K ++ S+++ ++V++ +  +A AA   T  AP +A A+   ++D  +G ++  +N  +S 
Sbjct: 2   KLLNHSFKTLLLVSSLSITAANAAPVVTPDAPKVA-AKAFILMDYNSGQIIAEENAYESL 60

Query: 61  PPASLAKLMTVEVVLDALSKGQVTPETAYPVSEYAWRTGGAPSRTSTMFAALKSSVGIND 120
            PASL K+MT  V+   +  G ++P+    +S+ AW      S  S MF  +   V + +
Sbjct: 61  NPASLTKMMTSYVIGHEIKVGNISPQDKVTISKNAWSKNFPDS--SKMFIEVGKQVSVEE 118

Query: 121 LLTGIIVQNANDGCIIVAEGMAGSDAAFAKRMTARAGELGMNRSIFSNSTGLPDPGNQTT 180
           L  GII+Q+ ND C+ +AE +AG++  F   M + A +LGM  S F NS GL    ++TT
Sbjct: 119 LNRGIIIQSGNDACVAMAEHIAGTEDGFVDLMNSWAKQLGMRDSYFENSHGLDSENHKTT 178

Query: 181 ARDMVRLAQHLHDTYPDRYALFTKPDFEWNRIFQRNKNTLLMPGS-GIDGLGLGFAEGSG 239
           A DM  L   L    P+ Y ++++  F +N I Q N+N LL   S  +DG+  G   G+G
Sbjct: 179 AYDMALLGAALIRDVPEEYRVYSEKSFTYNGIKQYNRNGLLWDKSLNVDGIKTGHTSGAG 238

Query: 240 FAAVVSAEREGRRVYLALAGIADDKTRQEEARRVVDWGLTAFEKRHLFSKDEAVGAVSVY 299
           +  V SA ++G R+   + G A +  R+ E+++++++G   FE    +   ++     ++
Sbjct: 239 YNLVTSATKDGMRLVSVVLGTASESARKAESKKLLNYGFRFFETITPYKAGDSFVTQKIW 298

Query: 300 GGDVSHIDLSPKEDVSVLVPVNNPDRISGRIVYRWPLNAPLDVGANAGTLKIFSGERLLR 359
            GD   +DL    D  + +       +         L AP+  G   G +      + + 
Sbjct: 299 YGDRESVDLGVLTDTPITISRGQAKNLEANYELNKELTAPIAKGETVGRIYFQLNGKDIA 358

Query: 360 EVPLYTKTAVGKGSLTQNATGALKELLLFW 389
           + PL T   V +GS         K++   W
Sbjct: 359 QFPLVTLQEVNEGSWFSKLMDYFKQMFASW 388