Pairwise Alignments

Query, 390 a.a., penicillin binding protein from Agrobacterium fabrum C58

Subject, 390 a.a., D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  179 bits (453), Expect = 2e-49
 Identities = 110/370 (29%), Positives = 184/370 (49%), Gaps = 4/370 (1%)

Query: 21  FSAGAAQSQTAPFIAKAEQAYMIDAETGTVLLSQNEDQSFPPASLAKLMTVEVVLDALSK 80
           ++A    +  AP +A A+   ++D  +G ++  +N  +S  PASL K+MT  V+   +  
Sbjct: 22  YAAQPIVTPDAPTVA-AKAYVLMDYYSGQIIAEENAYESLNPASLTKMMTSYVIGQEIKA 80

Query: 81  GQVTPETAYPVSEYAWRTGGAPSRTSTMFAALKSSVGINDLLTGIIVQNANDGCIIVAEG 140
           G V+P+    +S+ AW    + S  S MF  +  +V ++DL  GII+Q+ ND C+ +AE 
Sbjct: 81  GNVSPDDDVTISKNAWSKNFSDS--SKMFIEVGKTVKVSDLNRGIIIQSGNDACVAMAEH 138

Query: 141 MAGSDAAFAKRMTARAGELGMNRSIFSNSTGLPDPGNQTTARDMVRLAQHLHDTYPDRYA 200
           +AG++ AF   M + + +LGM  S F NS GL    ++TTA DM  L   L    P+ Y 
Sbjct: 139 IAGTEGAFVDMMNSWSKQLGMRDSYFENSHGLDSENHKTTAYDMALLGAALIRDVPEEYR 198

Query: 201 LFTKPDFEWNRIFQRNKNTLLMPGS-GIDGLGLGFAEGSGFAAVVSAEREGRRVYLALAG 259
           ++++  + +N I Q N+N LL   S  +DG+  G   G+G+  V SA ++G R+   + G
Sbjct: 199 IYSEKYYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLVASATKDGMRLISVVMG 258

Query: 260 IADDKTRQEEARRVVDWGLTAFEKRHLFSKDEAVGAVSVYGGDVSHIDLSPKEDVSVLVP 319
              +  R+ E+++++ +G   FE    +   ++     ++ GD S +DL    D  + V 
Sbjct: 259 TQSEAARKAESKKLLTYGFRFFETVTPYKAGDSFVTQQIWYGDKSTVDLGVATDTPITVS 318

Query: 320 VNNPDRISGRIVYRWPLNAPLDVGANAGTLKIFSGERLLREVPLYTKTAVGKGSLTQNAT 379
                 +        PL+APL  G   G L      + + + PL T   V +GS      
Sbjct: 319 RGRAKDLKANFELTKPLDAPLKKGETVGRLYFQLDGKDIAQFPLVTLQEVNEGSWFSKLV 378

Query: 380 GALKELLLFW 389
              K+L   W
Sbjct: 379 DYFKQLFSGW 388