Pairwise Alignments

Query, 341 a.a., DNA polymerase III, delta prime subunit from Agrobacterium fabrum C58

Subject, 315 a.a., replication factor C small subunit from Methanococcus maripaludis S2

 Score = 59.7 bits (143), Expect = 1e-13
 Identities = 64/261 (24%), Positives = 112/261 (42%), Gaps = 45/261 (17%)

Query: 14  PQQNTRLFGHEEAEAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFANHVLTHPDPASA 73
           P+  + + GH E    L  +Y   K    +L  G  G+GK T A             A A
Sbjct: 11  PETLSEVVGHHEIIKRLT-NYVEKKSMPHLLFSGSPGVGKTTAAL------------ALA 57

Query: 74  PDFLADPDPQSLVSRQITAGASHNLLHLTRPVDEKTGRVKSAITVDEVRRAGHFFSQTSG 133
            D   D   +             N L L    DE+         +D +R     F++T  
Sbjct: 58  KDLYGDTWRE-------------NFLELNSS-DERG--------IDVIRTKVKDFARTKP 95

Query: 134 TGN--WRIVIIDPADDLNRNAANAILKILEEPPKRAMFLVLSHAPGKLLPTIRSRCMPLR 191
            G+  ++++ +D +D L  +A NA+ + +E+      F++  + P K++P I+SRC   R
Sbjct: 96  IGDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFR 155

Query: 192 LLPLSDAAMVQALDQL----DISPEGEKRDALLTASKGSVAQALKLMNYGG--SDIV--E 243
             PL    +V+ L  +    +++ E    DA++  S+G + +A+ ++      SD +  E
Sbjct: 156 FSPLKTEDLVENLKDISEKENLNLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDEITEE 215

Query: 244 AFAEVMSAEGPGARKRMHKLA 264
              +V S   P   K+M +LA
Sbjct: 216 IVYKVASKARPDEIKKMTQLA 236