Pairwise Alignments

Query, 593 a.a., chloride channel protein from Agrobacterium fabrum C58

Subject, 569 a.a., Cl- channel, voltage-gated family protein (RefSeq) from Shewanella loihica PV-4

 Score =  116 bits (290), Expect = 3e-30
 Identities = 105/404 (25%), Positives = 171/404 (42%), Gaps = 19/404 (4%)

Query: 34  LVALAVLIGVAAGLLVALIGALSTALHILVFGVERLSSSDLSGRIVLFGPIIGGMLLGLI 93
           L  LA+   + A  ++ L   L   L+ L    E   + +L    VL  P++G +L+  +
Sbjct: 33  LCGLALAFALVASGVIILFRLLLLWLNQLTQTQEWQFTGNLGDWRVLL-PLLGAILIWFV 91

Query: 94  IFILSKTRKKPMIDPI-EANALHGGRLSLTDSIIVCVQNIVSNGFGASVGLEAGYTQIAS 152
             + SK  K+  I  + +   LH G++ L  +     Q + +     SVG E     + +
Sbjct: 92  AVLGSKRYKRMGIAYVMQRMKLHYGKIPLQSAPGQFFQALFALATNFSVGREGPAIHLGA 151

Query: 153 GVASKIGIKLKLRRGDMRILVGCGAAGAIAAAFNAPLTGAFYAIELIIGTYTVVTLAPLI 212
             AS +  K KL    +RI+   G A  IAA FNAPL    +  E+I+  Y V    P++
Sbjct: 152 VSASVMAEKFKLPDNSVRIMCASGIAAGIAATFNAPLAAVIFVFEVILREYKVHYFFPIM 211

Query: 213 VSALVATTVIGLIGGHGLSIDIVDASRVTPADYVPAIFLGVVCAAIGIVLMQAVSFIEET 272
           +SA+       L+ G+    D +  S +  + Y      GV    I  +     + ++ T
Sbjct: 212 LSAICGALSSQLVFGNIHEYDQIGVSHIPLSQYPVLALCGVTLGCIAALFNH--TLLKVT 269

Query: 273 ARKSAIPGWLRPTLGGVAVGGLALISPQVLSSGHGALHLNIDAELTIYGLAGLFMLKAAA 332
           A+    P  LR  + G+    +    PQ L SG  A+   I    ++  L GL + K  A
Sbjct: 270 AKGQQHPLILRLLIAGLITTIIGFFLPQALGSGDLAISHAISEHPSLALLVGLLLGKIIA 329

Query: 333 SAISIGSNFRGGLFFASLFMGSLLGKIFALCA--------PYIGYGSTAPIVYAVIGMSA 384
           +  +IG    GG+      +G+L+G I A+ +        PY+G       +Y +IGM+A
Sbjct: 330 TIAAIGLGIPGGIIGPLFGIGALIGAILAVVSAMLFPTITPYVG-------LYTIIGMTA 382

Query: 385 FAAAIIGGPLTMTFLALELTGDFQITALVLAAVITTSLVVRTTF 428
                +  PL      LELT +  I    +   I   L+    F
Sbjct: 383 MMGVCLSAPLAALVALLELTNNAAIILPSMFVTIPAFLIAHQAF 426