Pairwise Alignments

Query, 168 a.a., ECF family sigma factor from Agrobacterium fabrum C58

Subject, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

 Score = 61.2 bits (147), Expect = 9e-15
 Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 11/136 (8%)

Query: 31  DLVQDCLERAIRKKALWRPQGPLRPWLYRVLVNVYRNNLRGSKRRPQQIPID-------- 82
           D+ Q+   +A R    +R +     WLYR+ VN  +N++    RRP    +D        
Sbjct: 49  DVAQEAFIKAYRAIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYE 108

Query: 83  --DVTEQLVVPAAQTGRVALAEMA-RAIEKLSGEHRETLLLVVVEGLTYAEAANILEIPL 139
             D  ++L  P   T    L +    AI+ L  + +  + L  ++GL+Y E A +++ P+
Sbjct: 109 GGDALKELSNPENITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPV 168

Query: 140 GTLMSRLGRARTALAR 155
           GT+ SR+ RAR A+ +
Sbjct: 169 GTVRSRIFRAREAVEK 184