Pairwise Alignments

Query, 329 a.a., ribosomal large subunit pseudouridine synthase C from Agrobacterium fabrum C58

Subject, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

 Score =  170 bits (431), Expect = 4e-47
 Identities = 111/316 (35%), Positives = 178/316 (56%), Gaps = 22/316 (6%)

Query: 4   IEHIKVEADEAGMRLDRWFKIHYPGLGFGQLQKLLRSGQVRVDGGRVKTDARVQPGQMVR 63
           ++ I ++ D AG R+D + +     +    + ++LR G+VRV+  RVK + +++ G +VR
Sbjct: 8   VQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVR 67

Query: 64  VPPVDSDMKTKTGPIGSKDLKHSADGELLARMLLHEDDKVLVFNKPAGIAVQGGSGVNRH 123
           VPPV  ++K       S  L   A+   L   +++EDD +L+ NKP+G AV GGSG++  
Sbjct: 68  VPPVTVEVKENEPAPPSTKLSKVAE---LEHCIVYEDDHLLILNKPSGTAVHGGSGLHF- 123

Query: 124 IDGLLEAWTS--PKGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFRERDTKKTYWAL 181
             G +EA  +  P+     LVHR+DRDTSG+L+VA+ R A + L A FRE+  +K Y+AL
Sbjct: 124 --GAIEALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYAL 181

Query: 182 VRGVPRKHQDKISTWLVKEQTPDGDRMRIAKHGEEGADHAISYYRVIDTAAQNLAWLEME 241
           V G        ++  L+K +      +R+  +G+       + +R+++  A+    ++  
Sbjct: 182 VMGHWDAECKVVNAPLLKNEV--NSIVRVNPNGKPSE----TRFRILEKFAE-ATLVQAS 234

Query: 242 PYTGRTHQLRVHALHMGHPIIGDPKYYIDDPNWD---FPGGVQKRLHLHARHIDIPHP-N 297
           P TGRTHQ+RVH  +MGHPI  D +Y   D  +D      G++ RL LHA +I   HP +
Sbjct: 235 PVTGRTHQIRVHTQYMGHPIAWDDRY--GDRRFDAYTAQFGIE-RLFLHAANIQFVHPAS 291

Query: 298 GGRLRVSAPLPPHMVQ 313
             +L + APL  H+ Q
Sbjct: 292 EKKLEIHAPLEAHLEQ 307