Pairwise Alignments

Query, 329 a.a., ribosomal large subunit pseudouridine synthase C from Agrobacterium fabrum C58

Subject, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

 Score =  108 bits (271), Expect = 1e-28
 Identities = 89/320 (27%), Positives = 147/320 (45%), Gaps = 38/320 (11%)

Query: 9   VEADEAGMRLDRWFKIHYPGLGFGQLQKLLRSGQVRVDGGRV-KTDARVQPGQMVRVPPV 67
           V+  + G RLD+     +      +L++ L  G++ V+G  + K   +V  G+++ V   
Sbjct: 11  VKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQAE 70

Query: 68  DSDMKTKTGPIGSKDLKHSADGELLARMLLHEDDKVLVFNKPAGIAVQGGSG-VNRHIDG 126
             D             +   + + L   +++EDD ++V NKP    V  G+G  ++ +  
Sbjct: 71  LED-------------EQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLN 117

Query: 127 LLEAWTSPKGEKPR--LVHRLDRDTSGVLVVARTRGAAQKLTAAFRERDTKKTYWALVRG 184
            L    SP  E PR  +VHRLD+DT+G++VVA+T  A  +L  A ++RD  + Y A+V G
Sbjct: 118 ALLFHYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIG 177

Query: 185 VPRKHQDKISTWLVKEQTPDGDRMRIAKHGEEGADHAISYYRVIDTAAQNLAWLEMEPYT 244
                    +  ++ +        R          HA+++YRV +   ++   L +   T
Sbjct: 178 T------MTAGGMIDKPIGRHSTKRTLMSVSPMGKHAVTHYRVAEHFREHTR-LRLRLET 230

Query: 245 GRTHQLRVHALHMGHPIIGDPKYYIDDPNWDFPGGVQKRL----------HLHARHIDIP 294
           GRTHQ+RVH  ++ HP++GD  Y         P G  + L           LHA  +   
Sbjct: 231 GRTHQIRVHMAYLQHPLLGDTAY---GGRARIPKGATEELTEMIRDFDRQALHAVMLKFE 287

Query: 295 HP-NGGRLRVSAPLPPHMVQ 313
           HP  G  L   AP+P  MV+
Sbjct: 288 HPVTGEELEFHAPVPDDMVE 307