Pairwise Alignments

Query, 80 a.a., putative RNA-binding protein Hfq from Agrobacterium fabrum C58

Subject, 87 a.a., RNA-binding protein Hfq from Vibrio cholerae E7946 ATCC 55056

 Score = 75.9 bits (185), Expect = 8e-20
 Identities = 34/77 (44%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 4  RSQNLQDLFLNTVRKQKISLTIFLINGVKLTGVVTSFDNFCVLLRRDGHSQLVYKHAIST 63
          + Q+LQD FLN +R+++I ++I+L+NG+KL G + SFD F +LL ++  +Q+VYKHAIST
Sbjct: 3  KGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILL-KNTVNQMVYKHAIST 61

Query: 64 IMPGQPMQMFESEEGAA 80
          ++P +P+     +  A+
Sbjct: 62 VVPARPVSHHSGDRPAS 78