Pairwise Alignments

Query, 454 a.a., two component response regulator from Agrobacterium fabrum C58

Subject, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  263 bits (671), Expect = 1e-74
 Identities = 160/455 (35%), Positives = 250/455 (54%), Gaps = 30/455 (6%)

Query: 4   DILVVDDEADIREIVAGILSDEGHETRMAFDSDSALAAI-SERVPRLIFLDIWMQGSKLD 62
           D+ ++DDE+DIR  +A          +     + AL AI ++ +P +I  DI + G  L 
Sbjct: 3   DVFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPG--LS 60

Query: 63  GLALLDEIKSRHPEIPVVMISGHGNIETAVNAIKRGAFDFIEKPFKADRLILIAERALEN 122
           G  LL  +  +  E+PV++I+GHG+I  AV A+  GA+DFIEKPF  +RLI    RA+E 
Sbjct: 61  GQNLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEK 120

Query: 123 SKLKREVQELKKRTGDAVEL----VGASLAVSQLRQTIDRVAPTNSRIMILGPSGSGKEL 178
            +L  E ++LK+    +  L    +G + A+  LR TI +VA T + I++ G +G+GKEL
Sbjct: 121 RRLTLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKEL 180

Query: 179 VARMVHKKSSRATGPFVALNAATITPDRMEIALFGTEG---LPGQPRKVGALEEAHRGVL 235
           VAR +H++SSR    FVA+N   +  + +E  L+G E         R+VG  E A  G L
Sbjct: 181 VARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTL 240

Query: 236 YLDEVGEMPRETQNKILRVLVDQQFERVGGGKRVKVDVRIISSTAHHLESLIAEGQFRED 295
           +LDE+  MP + Q ++LRVL ++  ER+G  + + +D+R+I++T   L+   AEG+FR+D
Sbjct: 241 FLDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQD 300

Query: 296 LYHRLAVVPVKVPALSERREDIPFLVDMFMRQISEQAGIRPRKIGDDAMAVLQTHDWPGN 355
           LY+RL +V + +P L ERREDIP L   F+   + + G     +    +  L +HDWPGN
Sbjct: 301 LYYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGN 360

Query: 356 IRQLRNNIERLMILARPEGGEAPISADMLPSDIGDMLPKISAQGDQHIMTLPLREAREMF 415
           +R+LRN  ER ++L +                    L + +   +     L L E    F
Sbjct: 361 VRELRNAAERYVLLGK--------------------LAQFAESHEPKSKLLGLNEQVAEF 400

Query: 416 ERDYLMAQINRFGGNISRTAEFVGMERSALHRKLK 450
           E+  L   +   GG+I  T E + + R  L+ K++
Sbjct: 401 EKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQ 435