Pairwise Alignments

Query, 277 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

Subject, 280 a.a., carbohydrate ABC transporter permease from Rahnella sp. WP5

 Score =  192 bits (487), Expect = 9e-54
 Identities = 102/264 (38%), Positives = 151/264 (57%)

Query: 14  LAVLFMLGFAAFPIYWMFVTSMTPSSELFAPFPRLVPDWSQLGIYLEVFDTIPVTTWLKN 73
           L +LF L FA FPIYW+   S+TP   L++   R+ P    L  +  VF       +  N
Sbjct: 17  LGILFYLVFALFPIYWLIKISVTPDKLLYSEGVRMWPGEMTLTHFQRVFTESQFPLYFFN 76

Query: 74  SFLVATGTTVLSILLAVLPAYALSRFRFAGLAILGFALFATQMLPEAMLVVPLYSIFGDL 133
           S +V+ GT  L+ ++A    +A SRF F G  ++   L  TQM P  M++ P+Y +   L
Sbjct: 77  SLIVSFGTAFLTTIIAAGAGFAFSRFSFRGKTVMAALLLFTQMFPLVMILAPIYKVMAPL 136

Query: 134 NLLNTIPGLVLANTAFVVPVITWIIKGAIDGIPIEIEEAARVDGCSRLDIVLGIIIPLIA 193
            L N++ GLVL  TAF VP  T++++   D IP ++EE+A ++GCSR   +  +IIPL  
Sbjct: 137 GLTNSLLGLVLIYTAFNVPFATFLMQSFFDSIPKDLEESAMLEGCSRFMALRKVIIPLTL 196

Query: 194 PTLAAAAVISFFHGWNEYVFAQTLISSENLRTASVGLASFVGELSTPIHSVMAVGVIYTL 253
           P +AA     F   W+E +F+  LI+   + T  VGL SFV + +     +MA  V+  +
Sbjct: 197 PGMAATLGFVFTAAWSELLFSLMLINKNEVMTFPVGLLSFVSKFAVSWGDMMAAAVLALI 256

Query: 254 PAIVFYLFAQRYVVAGMTAGSVKG 277
           PA +F+ F QRY+V G+TAG+VKG
Sbjct: 257 PACLFFAFIQRYLVQGLTAGAVKG 280