Pairwise Alignments

Query, 277 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

Subject, 281 a.a., carbohydrate ABC transporter permease from Rahnella sp. WP5

 Score =  154 bits (388), Expect = 3e-42
 Identities = 88/268 (32%), Positives = 138/268 (51%), Gaps = 8/268 (2%)

Query: 15  AVLFMLGFAAFPIYWMFVTSMTPSSELFAPFPRLVPDWSQLGIYLEVFDT--IPVTTWLK 72
           ++L  LG   FP + M +TS   S E  +  P L P       Y+++F+    P  ++ K
Sbjct: 17  SLLIFLGAMLFPFFIMLMTSFKSSKEAISRHPTLFPQEWDFHHYVDIFNPQIFPFLSYFK 76

Query: 73  NSFLVATGTTVLSILLAVLPAYALSRFRFAGLAILGFALFATQMLPEAMLVVPLYSIFGD 132
           NS  V+   +V+++   +L AYALSR RF G   +  + +   M    +LVVPL+ I   
Sbjct: 77  NSLTVSVLASVIAVFFGILGAYALSRLRFKGRVTINASFYTVYMFSGILLVVPLFKIISA 136

Query: 133 LNLLNTIPGLVLANTAFVVPVITWIIKGAIDGIPIEIEEAARVDGCSRLDIVLGIIIPLI 192
           L L +T   LV+      +P   +++K   D IP +IEEAA +DG +RL I+  I +PL 
Sbjct: 137 LGLYDTTTALVITMVVQTLPTAVFMLKSYFDTIPHDIEEAAMMDGLNRLQIIFYITVPLA 196

Query: 193 APTLAAAAVISFFHGWNEYVFAQTLISSENLRTASVGLASFVGELSTPIH---SVMAVGV 249
              + +  V  F   WN+Y+FA   +SS    T  VGL +     STP +    +MA  +
Sbjct: 197 ISGIISVFVYCFMVAWNDYLFASIFLSSSANFTLPVGLNTL---FSTPDYVWGRMMAASL 253

Query: 250 IYTLPAIVFYLFAQRYVVAGMTAGSVKG 277
           +  LP ++ Y  ++R++   +T G VKG
Sbjct: 254 VTALPVVLMYALSERFIKGNLTDGGVKG 281