Pairwise Alignments

Query, 977 a.a., ribonuclease E from Agrobacterium fabrum C58

Subject, 1065 a.a., Ribonuclease E (EC 3.1.26.12) from Pseudomonas fluorescens FW300-N2E2

 Score =  387 bits (994), Expect = e-111
 Identities = 264/724 (36%), Positives = 382/724 (52%), Gaps = 50/724 (6%)

Query: 261 RKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISR 320
           + P  +  I++V+   Q ++VQV KEERGNKGAALTT++SLAGRY VLMPN  R GGISR
Sbjct: 77  KAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISR 136

Query: 321 KITQPTDRKRLKEIARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWENVRTLTLN 380
           +I +  +R  L+E    L  P  MG+I+RTAG  R+  E++ D +YL++LW  ++  +L+
Sbjct: 137 RI-EGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASLD 195

Query: 381 STAPCLVYEEGSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKMLMPSHAKVVQPYRD 440
            +AP L+Y+E ++I R+IRD   +DI E+++   E   EA  F++ +MP +A  ++ Y D
Sbjct: 196 RSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYED 255

Query: 441 IHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIEETALT 500
             P+F+R  IE+Q++   Q  V L SGG ++I+ TEALV+ID+NS R+T+   IEETAL 
Sbjct: 256 SVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGSDIEETALQ 315

Query: 501 TNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISH 560
           TNLEAAEE+ARQLRLRD+ GL+VIDFIDM   +N R+VE+K+++CL+ DRAR+QVGRIS 
Sbjct: 316 TNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISR 375

Query: 561 FGLLEMSRQRIRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEEYLLRNTTHNITV 620
           FGLLEMSRQR+R S+ ES+  VC  C GTG +R   S++L +LR +EE  L++ T  +  
Sbjct: 376 FGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALKDRTAEVRA 435

Query: 621 RCTPETALYLLNHKRGSIVDYEGRFGVAIIIAADSSVGAQHFAI-----DRGEAVENPVK 675
           +     A +LLN KR SI   E R    I+I  +  +   HF +     D  EA  N   
Sbjct: 436 QVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQRLRDDSPEAHTN--- 492

Query: 676 IESLIQMLPSFVEEEDDIVIEVEEDEEEEEIVKAESAQPRQQPQGDNGEDGKRKRKRRRR 735
            +S  ++  +  E E     EV+       +V+ E+A  +  P   N             
Sbjct: 493 -QSSYEIAAAAAEVE-----EVQPAAATRTLVRQEAA-VKTAPARANAPVPTEVTAPVAA 545

Query: 736 RRGKGGQNEQNGALDGQSGNDA--EDDDAEGDDDGVETDEAGADSDE--NGANEAANADE 791
                  +   G +       A  E+  A        T E  A ++E  NG  +  N + 
Sbjct: 546 PAAAPEPSLFKGLVKSLVSLFATKEEPAAPAVVAKPATTERPARNEERRNGRQQTRNRNG 605

Query: 792 DGKRKRRRRGKRGGRRNRDDALDAAGADGETEGEGAEGEEVSTAAPVTEEPATAAEVVEG 851
               +R+ R +R  R  R      A  +   E +  E  E        E PA A E    
Sbjct: 606 RRDEERKPREERAPREER------APREPREERQPREARE--------EAPAVARE---- 647

Query: 852 VVADVVAEEAPKKPRRTRKAKTKTETETEEAPKAETV-ETVEPVIIEPVVVEATVVDVAI 910
                  E AP+ PR  R+ +   E       + E V E  EP+   P    AT  +   
Sbjct: 648 -------ERAPRPPREERQPRAPREDRKPRGEREERVRELREPLDAAPAAA-ATAEERPA 699

Query: 911 EEVGEASAGLAPGAD-VPGTEEKTRANRGSNVSSSEPVVTSSGSPASNPDGDEPKPRKGG 969
            +  E  A   P  +  P  E+   A     V ++E  +   G   +  +GD P+ R  G
Sbjct: 700 RQPREERAPRPPREERQPRAEQAAAAASEEEVLNTEEQLQEDGQDTA--EGDRPRRRSRG 757

Query: 970 WWQR 973
             +R
Sbjct: 758 QRRR 761



 Score = 83.2 bits (204), Expect = 9e-20
 Identities = 38/76 (50%), Positives = 54/76 (71%)

Query: 5  MLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV +V G R+ + D ES  ++Q + NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 1  MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60

Query: 65 RHGFLAFAEIHPDYYQ 80
          RHGFL   EI  +Y++
Sbjct: 61 RHGFLPLKEISREYFK 76



 Score = 39.3 bits (90), Expect = 1e-06
 Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 12/108 (11%)

Query: 92  AEAEDHRRSDDFESA--DAPESGAPMIDLSQVD---------QPDVGIVAASETTDVAVT 140
           AEA+ H +++   +A   AP + AP+++   V+          P+V +  A E   VA T
Sbjct: 815 AEAQAHEQAERATAAVESAPVAEAPVVEAPVVEATTPVEVTASPEVEVAPAHE-AQVAET 873

Query: 141 EEVAPVSEAVSEETAVEVVAEEAPAEEEKPKKRVRRPRAKKKTAEEIA 188
           E VA  +  V +       A E PAEE+ P+       A   TAE  A
Sbjct: 874 EVVAEPAPVVEQPVVAAEPAVETPAEEKAPEPAREEQTAFNWTAEPAA 921