Pairwise Alignments

Query, 977 a.a., ribonuclease E from Agrobacterium fabrum C58

Subject, 1063 a.a., ribonuclease E from Pseudomonas fluorescens FW300-N2C3

 Score =  390 bits (1001), Expect = e-112
 Identities = 259/720 (35%), Positives = 374/720 (51%), Gaps = 41/720 (5%)

Query: 261 RKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISR 320
           + P  +  I++V+   Q ++VQV KEERGNKGAALTT++SLAGRY VLMPN  R GGISR
Sbjct: 80  KAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISR 139

Query: 321 KITQPTDRKRLKEIARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWENVRTLTLN 380
           +I +  +R  L+E    L  P  MG+I+RTAG  R+  E++ D +YL++LW  ++  +L+
Sbjct: 140 RI-EGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASLD 198

Query: 381 STAPCLVYEEGSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKMLMPSHAKVVQPYRD 440
            +AP L+Y+E ++I R+IRD   +DI E+++   E   EA  F++ +MP +A  ++ Y D
Sbjct: 199 RSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYED 258

Query: 441 IHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIEETALT 500
             P+F+R  IE+Q++   Q  V L SGG ++I+ TEALV+ID+NS R+T+   IEETAL 
Sbjct: 259 SVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGSDIEETALQ 318

Query: 501 TNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISH 560
           TNLEAAEE+ARQLRLRD+ GL+VIDFIDM   +N R+VE+K+++CL+ DRAR+QVGRIS 
Sbjct: 319 TNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISR 378

Query: 561 FGLLEMSRQRIRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEEYLLRNTTHNITV 620
           FGLLEMSRQR+R S+ ES+  VC  C GTG +R   S++L +LR +EE  L++ T  +  
Sbjct: 379 FGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALKDRTAEVRA 438

Query: 621 RCTPETALYLLNHKRGSIVDYEGRFGVAIIIAADSSVGAQHFAI-----DRGEAVENPVK 675
           +     A +LLN KR SI   E R    I+I  +  +   HF +     D  EA  N   
Sbjct: 439 QVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQRLRDDSPEAHTN--- 495

Query: 676 IESLIQMLPSFVEEEDDIVIEVEEDEEEEEIVKAESAQPRQQPQGDNGEDGKRKRKRRRR 735
            +S  ++  +  E E     EV+       +V+ E+A  +  P   N             
Sbjct: 496 -QSSYEIAAAAAEVE-----EVQPAAATRTLVRQEAA-VKTAPARANAPVPTEVAAPVAA 548

Query: 736 RRGKGGQNEQNGALDGQSGNDAEDDDAEGDDDGVETDEAGADSDENGANEAANADEDGKR 795
                  +   G +       A  +  E     V    A  +             +   R
Sbjct: 549 PAAAPEPSLFKGLVKSLVSLFATKE--EPVTPAVVAKPAATERPARNEERRNGRQQTRNR 606

Query: 796 KRRRRGKRGGRRNRDDALDAAGADGETEGEGAEGEEVSTAAPVTEEPATAAEVVEGVVAD 855
             RR  +R  R  R    + A  +   E +  E  E        E P  A E        
Sbjct: 607 NGRRDEERKPREERAPREERAPREPREERQPREARE--------EAPVVARE-------- 650

Query: 856 VVAEEAPKKPRRTRKAKTKTETETEEAPKAETV-ETVEPVIIEPVVVEATVVDVAIEEVG 914
              E AP+ PR  R+ +   E       + E V E  EP+   P V  AT  +    +  
Sbjct: 651 ---ERAPRPPREERQPRAPREDRKPRGEREERVRELREPLDAAPAVAAATTEERPARQPR 707

Query: 915 EASAGLAPGAD-VPGTEEKTRANRGSNVSSSEPVVTSSGSPASNPDGDEPKPRKGGWWQR 973
           E  A   P  +  P  E+   A     V ++E  +   G   +  +GD P+ R  G  +R
Sbjct: 708 EERAPRPPREERQPRAEQAAAAASEEEVLNAEEQLQEDGQDTA--EGDRPRRRSRGQRRR 765



 Score = 84.0 bits (206), Expect = 5e-20
 Identities = 38/77 (49%), Positives = 55/77 (71%)

Query: 4  KMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYGG 63
          +MLI+A+  EE RV +V G R+ + D ES  ++Q + NIY  ++TR+EPSL+AAFVD+G 
Sbjct: 3  RMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGS 62

Query: 64 NRHGFLAFAEIHPDYYQ 80
           RHGFL   EI  +Y++
Sbjct: 63 ERHGFLPLKEISREYFK 79



 Score = 30.8 bits (68), Expect = 5e-04
 Identities = 36/143 (25%), Positives = 55/143 (38%), Gaps = 16/143 (11%)

Query: 44  LAKVTRVEPSLQAAFVDYGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEDHRRSDDF 103
           LA    V  S  +A  +   +     A A +     + P+ +    ++A A     S + 
Sbjct: 804 LAVTAAVASSTISAPAEAQAHEQAERATAAVESAPVEAPVVEATTPVEATA-----SPEV 858

Query: 104 ESADAPESGAPMIDLSQVDQPDVGIVAASETTDVAVTEEVAPVSEAVSEETAVEVVAEEA 163
           E A AP++           QP+  +VA       A      PV EA +EE A E V EE 
Sbjct: 859 ELAPAPDA-----------QPEAEVVAEPAPVVEAPVVAAEPVVEAPAEEKAPEPVREEQ 907

Query: 164 PAEEEKPKKRVRRPRAKKKTAEE 186
            A     +     P A+ ++A E
Sbjct: 908 TAFNWTAEPAAPAPVAEPESAPE 930