Pairwise Alignments

Query, 977 a.a., ribonuclease E from Agrobacterium fabrum C58

Subject, 1061 a.a., ribonuclease E from Pseudomonas fluorescens FW300-N2E3

 Score =  390 bits (1001), Expect = e-112
 Identities = 255/714 (35%), Positives = 371/714 (51%), Gaps = 25/714 (3%)

Query: 261 RKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISR 320
           + P  +  I++V+   Q ++VQV KEERGNKGAALTT++SLAGRY VLMPN  R GGISR
Sbjct: 80  KAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISR 139

Query: 321 KITQPTDRKRLKEIARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWENVRTLTLN 380
           +I +  +R  L+E    L  P  MG+I+RTAG  R+  E++ D +YL++LW  ++  +L+
Sbjct: 140 RI-EGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASLD 198

Query: 381 STAPCLVYEEGSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKMLMPSHAKVVQPYRD 440
            +AP L+Y+E ++I R+IRD   +DI E+++   E   EA  F++ +MP +A  ++ Y D
Sbjct: 199 RSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYED 258

Query: 441 IHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIEETALT 500
             P+F+R  IE+Q++   Q  V L SGG ++I+ TEALV+ID+NS R+T+   IEETAL 
Sbjct: 259 SVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGSDIEETALQ 318

Query: 501 TNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISH 560
           TNLEAAEE+ARQLRLRD+ GL+VIDFIDM   +N R+VE+K+++CL+ DRAR+QVGRIS 
Sbjct: 319 TNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISR 378

Query: 561 FGLLEMSRQRIRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEEYLLRNTTHNITV 620
           FGLLEMSRQR+R S+ ES+  VC  C GTG +R   S++L +LR +EE  L++ T  +  
Sbjct: 379 FGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALKDRTAEVRA 438

Query: 621 RCTPETALYLLNHKRGSIVDYEGRFGVAIIIAADSSVGAQHFAIDRGEAVENPVKIESLI 680
           +     A +LLN KR SI   E R    I+I  +  +   HF + R         I    
Sbjct: 439 QVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQRLRDDSPEAHINQSS 498

Query: 681 QMLPSFVEEEDDIVIEVEEDEEEEEIVKAESAQPRQQPQGDNGEDGKRKRKRRRRRRGKG 740
             + +   E    V EV+       +V+ E+A      + +     +             
Sbjct: 499 YEIAAAAAE----VEEVQPAAATRTLVRQEAAVKTAPARANAPVPTEVVAAPVAAPVAAP 554

Query: 741 GQNEQNGALDGQSGNDAEDDDAEGDDDGVETDEAGADSDENGANEAANADEDGKRKRRRR 800
             +   G +       A  ++       V  ++  A+             +   R  RR 
Sbjct: 555 EPSLFKGLVKSLVSLFATKEEPAAP---VVVEKPAAERPARNEERRNGRQQSRNRNGRRD 611

Query: 801 GKRGGRRNRDDALDAAGADGETEGEGAEGEEVSTAAPVTEEPATAAEVVEGVVADVVAEE 860
            +R  R  R    + A  +   E +  E  E        E PA A E  E        E 
Sbjct: 612 EERKPREERAPREERAPREPREERQPREARE--------ETPAVARE--ERAPRPPREER 661

Query: 861 APKKPRRTRKAKTKTETETEEAPKAETVETVEPVIIEPVVVEATVVDVAIEEVGEASAGL 920
           AP+ PR  RK +     E EE P  E  E ++        V A   +    +  E  A  
Sbjct: 662 APRAPREDRKPR----GEREERPVRELREPLDAAPAAAAAVTAAAEERPARQPREERAPR 717

Query: 921 APGAD-VPGTEEKTRANRGSNVSSSEPVVTSSGSPASNPDGDEPKPRKGGWWQR 973
            P  +  P  E+   A     + +SE  +   G    N +GD P+ R  G  +R
Sbjct: 718 PPREERQPRAEQAAAAVAEEELPTSEEQLQEDGQ--DNAEGDRPRRRSRGQRRR 769



 Score = 84.0 bits (206), Expect = 5e-20
 Identities = 38/77 (49%), Positives = 55/77 (71%)

Query: 4  KMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYGG 63
          +MLI+A+  EE RV +V G R+ + D ES  ++Q + NIY  ++TR+EPSL+AAFVD+G 
Sbjct: 3  RMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGS 62

Query: 64 NRHGFLAFAEIHPDYYQ 80
           RHGFL   EI  +Y++
Sbjct: 63 ERHGFLPLKEISREYFK 79



 Score = 28.5 bits (62), Expect = 0.003
 Identities = 30/95 (31%), Positives = 39/95 (41%), Gaps = 16/95 (16%)

Query: 109 PESGAPMIDLSQVDQPDVGIVAASETTDVAVTEEVAPVSEA------VSEETAVEVVAE- 161
           PE  A +      +QP   +VAA    +  V E+   V E       V+E  AVE  A  
Sbjct: 874 PEVHAAVEPAVVAEQP---VVAAEPVAEAPVAEKAPEVREEQTAFNWVAETAAVEAPAPV 930

Query: 162 -EAPAEEEKPKKRVRRPRAKKKTAEEIAAEAAEAS 195
            EAPA   +P   V  P        E+AA   EA+
Sbjct: 931 AEAPAVVAEPAPVVEAP-----VVTEVAAPVVEAA 960