Pairwise Alignments

Query, 977 a.a., ribonuclease E from Agrobacterium fabrum C58

Subject, 1052 a.a., ribonuclease E from Vibrio cholerae E7946 ATCC 55056

 Score =  374 bits (959), Expect = e-107
 Identities = 265/780 (33%), Positives = 386/780 (49%), Gaps = 98/780 (12%)

Query: 249 EDAMEEVPDRVARKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVL 308
           E A E  PD  + + R    I++V+   Q ++VQ+ KEERG+KGAALTT++SLAG Y VL
Sbjct: 72  EIAREYFPDGYSYQGRPN--IKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVL 129

Query: 309 MPNTARGGGISRKITQPTDRKRLKEIARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLM 368
           MPN  R GGISR+I +  +R  LK     LE+PQGMG+I+RTAG  ++  E++ D   L+
Sbjct: 130 MPNNPRAGGISRRI-EGDERTELKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLL 188

Query: 369 RLWENVRTLTLNSTAPCLVYEEGSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKMLM 428
           + W  ++  + ++ AP L+++E ++I R+IRD   +DI EI++     Y  A + ++++ 
Sbjct: 189 KHWSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVR 248

Query: 429 PSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRS 488
           P     V+ Y    P+FS   IE+Q++   Q +V L SGG ++I+ TEAL +ID+NS R+
Sbjct: 249 PDFVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308

Query: 489 TREHSIEETALTTNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKN 548
           T+   IEETAL TNLEAA+E+ARQLRLRDL GLVVIDFIDM   R+ R VE +L++ ++ 
Sbjct: 309 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRV 368

Query: 549 DRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEE 608
           DRAR+Q+GRIS FGLLEMSRQR+  S+ E++  +C  C GTG +R   S+AL VLR +EE
Sbjct: 369 DRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEE 428

Query: 609 YLLRNTTHNITVRCTPETALYLLNHKRGSIVDYEGRFGVAIIIAADSSVGAQHFAIDRGE 668
             L++ T  +        A YLLN KR SI   E    V I I  +S +   HF + R  
Sbjct: 429 EALKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVR 488

Query: 669 AVEN--------PVKIESL----------IQMLPSFVEE--------------------- 689
             E         P K+E++          +++ P  +EE                     
Sbjct: 489 EGEEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPK 548

Query: 690 -EDDIVIEVEEDEEE-------EEIVKAESAQPR----QQPQGDNGEDGKRKRKR----R 733
            E   V EV++  +        + I    SA P     + P   N E  K +R+R     
Sbjct: 549 AEPQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNN 608

Query: 734 RRRRGKGGQNEQNGALDGQSGNDAEDDDA-EGDDDGVETDEAGADSDENGANEAANADED 792
            RRR    +N + G  +    ND E  ++     +     E G  ++ N  NE       
Sbjct: 609 DRRRNPRDKNRRRGNEENNERNDKETSNSNRKPQERKPKQERGERNERNDRNE------- 661

Query: 793 GKRKRRRRGKRGGRRNRDDALDAAGADGETEGEGAEGEEVSTAAPVTEEPATAAEVVEGV 852
             R    R +R  RRN+ D    A    +     AE ++   A    EE A         
Sbjct: 662 --RPETERPERQDRRNKRDESKTAKLLEQGRQLAAEAQQEVKAVEPKEEKA--------- 710

Query: 853 VADVVAEEAPKKPRRTRKAKTKTETETEEAPKAETVETVEPVIIEPVVVEATVVDVAIEE 912
               V +E  ++ + +++ + K +   EE     T   V+     P  V   V D   + 
Sbjct: 711 ---AVVKERRQRRKLSKQIRVKDQLAAEELDNLSTA-PVDNAFDAPAPVNLPVTDDFADS 766

Query: 913 VGEASAGLAPGADVPGTEEKTRANRGSNVSSSEPVVTSSGSPASNPDGDEPKP---RKGG 969
             E         D    ++K R NR      S   + +SG          P P   RKGG
Sbjct: 767 AQE---------DNEQDDQKQRRNR-----RSPRHLRASGQRRRRGRDRRPNPFRLRKGG 812



 Score = 82.4 bits (202), Expect = 1e-19
 Identities = 38/76 (50%), Positives = 53/76 (69%)

Query: 4  KMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYGG 63
          +MLI+A+ +EE RV +V G R+ + D ES   +  + NIY  ++TR+EPSL+AAFVDYG 
Sbjct: 3  RMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGA 62

Query: 64 NRHGFLAFAEIHPDYY 79
           RHGFL   EI  +Y+
Sbjct: 63 ERHGFLPLKEIAREYF 78