Pairwise Alignments

Query, 977 a.a., ribonuclease E from Agrobacterium fabrum C58

Subject, 489 a.a., ribonuclease E/G from Vibrio cholerae E7946 ATCC 55056

 Score =  227 bits (578), Expect = 2e-63
 Identities = 129/409 (31%), Positives = 213/409 (52%), Gaps = 5/409 (1%)

Query: 259 VARKPRKQYRIQ---EVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARG 315
           VA   ++Q++++   E++++ Q ++VQV K+  G KGA LTT ++L  RY V MP  +  
Sbjct: 80  VAESEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHV 139

Query: 316 GGISRKITQPTDRKRLKEIARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWENVR 375
           G +S++I    +R+RLK+I        G G I+RTA       E+ +D  +L RLW  V 
Sbjct: 140 G-VSQRIESEAERERLKKIVSHYCDEHG-GFIIRTAAEGANEKELTQDAAFLKRLWSKVI 197

Query: 376 TLTLNSTAPCLVYEEGSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKMLMPSHAKVV 435
                     ++Y E  L +R +RD    ++++I++   + +   K+F    +P     +
Sbjct: 198 ERRSKYKNRSMLYGELGLAQRILRDFVGTELTKILIDSRQEFENLKEFTSEYVPELTAKL 257

Query: 436 QPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIE 495
           + Y    PIF     E ++ R L+ +V LKSGGYLII+QTEA+  ID+N+G      ++E
Sbjct: 258 ELYHGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGRRNLE 317

Query: 496 ETALTTNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQV 555
           ET   TN+EA + +ARQLRLR+L G+++IDFIDM    + + V   L+  L  DR +  +
Sbjct: 318 ETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRVLTSLETALMKDRVKTNI 377

Query: 556 GRISHFGLLEMSRQRIRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEEYLLRNTT 615
              +  GL+EM+R+R R S+       C  C G G V++  ++   +LR +         
Sbjct: 378 NGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVETVCFEILREITRVNRAYDA 437

Query: 616 HNITVRCTPETALYLLNHKRGSIVDYEGRFGVAIIIAADSSVGAQHFAI 664
               V  +P  A  L   +  ++ + E   G  + I A+     + F +
Sbjct: 438 DKFVVYASPAVADTLQGEESHALAELEVFIGKEVRIQAEPLYNQEQFDV 486



 Score = 62.8 bits (151), Expect = 5e-14
 Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 18/175 (10%)

Query: 1   MADKMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++L++ +   ETRV ++ G  ++E   E E K+ I GNIY  KV+RV P +QAAFVD
Sbjct: 1   MSAELLLNVT-PSETRVAMIEGGILQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLAFAEIHPDYYQIPLADRQAL-LKAEAEDHRRSDDFESADAPESGAPMIDLS 119
            G ++  FL  ++I P    +  +++Q   ++  +E  R+  D               + 
Sbjct: 60  IGLDKAAFLHASDIVPHTECVAESEKQQFQVRDISELVRQGQDI--------------VV 105

Query: 120 QVDQPDVGIVAASETTDVAVTEEVAPVSEAVSEETAVEVVAEEAPAEEEKPKKRV 174
           QV +  +G   A  TTD+ +           S     + +  E+ AE E+ KK V
Sbjct: 106 QVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRI--ESEAERERLKKIV 158