Pairwise Alignments

Query, 977 a.a., ribonuclease E from Agrobacterium fabrum C58

Subject, 1075 a.a., ribonuclease E from Pseudomonas fluorescens SBW25-INTG

 Score =  382 bits (981), Expect = e-110
 Identities = 260/753 (34%), Positives = 382/753 (50%), Gaps = 80/753 (10%)

Query: 261 RKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISR 320
           + P  +  I++V+   Q ++VQV KEERGNKGAALTT++SLAGRY VLMPN  R GGISR
Sbjct: 96  KAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISR 155

Query: 321 KITQPTDRKRLKEIARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWENVRTLTLN 380
           +I +  +R  L+E    L  P  MG+I+RTAG  R+  E++ D +YL++LW  ++  +L+
Sbjct: 156 RI-EGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASLD 214

Query: 381 STAPCLVYEEGSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKMLMPSHAKVVQPYRD 440
            +AP L+Y+E ++I R+IRD   +DI E+++   E   EA  F++ +MP +A  ++ Y D
Sbjct: 215 RSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYED 274

Query: 441 IHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIEETALT 500
             P+F+R  IE+Q++   Q  V L SGG ++I+ TEALV+ID+NS R+T+   IEETAL 
Sbjct: 275 SVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGSDIEETALQ 334

Query: 501 TNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISH 560
           TNLEAAEE+ARQLRLRD+ GL+VIDFIDM   +N R+VE+K+++CL+ DRAR+QVGRIS 
Sbjct: 335 TNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISR 394

Query: 561 FGLLEMSRQRIRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEEYLLRNTTHNITV 620
           FGLLEMSRQR+R S+ ES+  VC  C GTG +R   S++L +LR +EE  L++ T  +  
Sbjct: 395 FGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALKDRTAEVRA 454

Query: 621 RCTPETALYLLNHKRGSIVDYEGRFGVAIIIAADSSVGAQHFAIDR-------------- 666
           +     A +LLN KR SI   E R    I+I  +  +   HF + R              
Sbjct: 455 QVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQRLRDDSPEAHSGQSS 514

Query: 667 ---------------GEAVENPVKIESLIQMLPSF----VEEEDDIVIEVEEDEEEEEIV 707
                            A    V+ E+ ++  P+     V  E    +       E  + 
Sbjct: 515 YEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPTEVAAPVAAPAALPEPSLF 574

Query: 708 K----------AESAQPRQQPQGDNGEDGKRKRKRRRRRRGKGGQNEQNGALDGQSGNDA 757
           K          A   +P      +     +  R   RR  G+     +NG  D +     
Sbjct: 575 KGLVKSLVSLFATKEEPVAPVVVEKPATERPARNEERR-NGRQQSRNRNGRRDEE--RKP 631

Query: 758 EDDDAEGDDDGVETDEAGADSDENGANEAANADEDGKRKRRRRGKRGGRRNRDDALDAAG 817
            ++ A  ++     + A  ++ E    E      + +  R  R  R  R  R+D      
Sbjct: 632 REERAPREERAPREERAPREARE----ETPTVAREERAPREERAPRTPRAPREDRKPR-- 685

Query: 818 ADGETEGEGAEGEEVSTAAPVTEEPATAAEVV--EGVVADVVAEEAPKKPRRTRKAKTKT 875
             GE E    E  E     P+   PA AAE V  E        E AP++ R+ R  + + 
Sbjct: 686 --GEREERVRELRE-----PLDAAPAVAAEAVSEERPARQPREERAPREERQPRAPREER 738

Query: 876 ETETEEAPKAETVETVEPVIIEPVVVEATVVDVAIEEVGEASAGLAPGADVPG------T 929
           +   E+A  A   E +            T  +   E+  E + G  P     G       
Sbjct: 739 QPRAEQAAAASEEEVL------------TGEEQPQEDGQEGAEGDRPRRRSRGQRRRSNR 786

Query: 930 EEKTRANRGSNVSSSEPVVTSSGSPASNPDGDE 962
            E+ R   G+ +  SE    ++ +  S P G E
Sbjct: 787 RERQRDANGNVIEGSEETGENAEAATSEPTGAE 819



 Score = 84.0 bits (206), Expect = 5e-20
 Identities = 38/77 (49%), Positives = 55/77 (71%)

Query: 4  KMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYGG 63
          +MLI+A+  EE RV +V G R+ + D ES  ++Q + NIY  ++TR+EPSL+AAFVD+G 
Sbjct: 19 RMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGS 78

Query: 64 NRHGFLAFAEIHPDYYQ 80
           RHGFL   EI  +Y++
Sbjct: 79 ERHGFLPLKEISREYFK 95



 Score = 39.7 bits (91), Expect = 1e-06
 Identities = 75/341 (21%), Positives = 110/341 (32%), Gaps = 84/341 (24%)

Query: 669 AVENPVKIESLIQMLPSF--VEEEDDIVIEVEEDEEEEEIVKAESAQPRQQPQGDNG-ED 725
           A+  P   + L++ L S    +EE    + VE+   E      E    RQQ +  NG  D
Sbjct: 567 ALPEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPATERPARNEERRNGRQQSRNRNGRRD 626

Query: 726 GKRKRKRRRRRRGKGGQNEQNGALDGQSGNDA---------------------EDDDAEG 764
            +RK +  R  R +    E+    + +                          ED    G
Sbjct: 627 EERKPREERAPREERAPREERAPREAREETPTVAREERAPREERAPRTPRAPREDRKPRG 686

Query: 765 D-DDGVETDEAGADSDENGANEAANADEDGKRKRRRRG------KRGGRRNRDDALDAAG 817
           + ++ V       D+    A EA + +   ++ R  R        R  R  R    + A 
Sbjct: 687 EREERVRELREPLDAAPAVAAEAVSEERPARQPREERAPREERQPRAPREERQPRAEQAA 746

Query: 818 ADGETE------------GEGAEGE----------------------------------- 830
           A  E E             EGAEG+                                   
Sbjct: 747 AASEEEVLTGEEQPQEDGQEGAEGDRPRRRSRGQRRRSNRRERQRDANGNVIEGSEETGE 806

Query: 831 --EVSTAAPVTEEPATAAEVVEGVVADVVA--EEAPKKPRRTRKAKTKTETETEEAPKAE 886
             E +T+ P   E A    V   V + V++   EA    +  R      ET   E P AE
Sbjct: 807 NAEAATSEPTGAELAAGLAVTAAVASSVISAPAEAQAHEQAERATAAVEETVIAETPVAE 866

Query: 887 TVETVEPVIIEPVVVEATVVDV-AIEEVGEASAGLAPGADV 926
           T   VE   +E  V EA VV+  A+E      A + P  +V
Sbjct: 867 T-PIVEAPAVEASVAEAPVVEAPAVEATTPIEAPVVPEVEV 906