Pairwise Alignments

Query, 977 a.a., ribonuclease E from Agrobacterium fabrum C58

Subject, 1061 a.a., ribonuclease E from Escherichia coli Nissle 1917

 Score =  351 bits (900), Expect = e-100
 Identities = 239/696 (34%), Positives = 344/696 (49%), Gaps = 86/696 (12%)

Query: 269 IQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITQPTDR 328
           I++V++  Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN  R GGISR+I +  DR
Sbjct: 90  IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDR 148

Query: 329 KRLKEIARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWENVRTLTLNSTAPCLVY 388
             LKE    LE+P+GMG+I+RTAG  ++   ++ D  + ++ WE ++    +  AP L++
Sbjct: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208

Query: 389 EEGSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKML-MPSHAKVVQPYRDIHPIFSR 447
           +E ++I R+ RD   +DI EI++   +    A+  +  L  P  +  ++ Y    P+FS 
Sbjct: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSH 268

Query: 448 SGIEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIEETALTTNLEAAE 507
             IE+Q++   Q +V L SGG ++I+ TEAL AID+NS R+TR   IEETA  TNLEAA+
Sbjct: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328

Query: 508 EVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEMS 567
           E+ARQLRLRDL GL+VIDFIDM   R+ R+VE +L++ ++ DRARIQ+  IS FGLLEMS
Sbjct: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388

Query: 568 RQRIRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEEYLLRNTTHNITVRCTPETA 627
           RQR+  S+ ES+  VC  C GTG VR   S++L +LR +EE  L+  T  +        A
Sbjct: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIA 448

Query: 628 LYLLNHKRGSIVDYEGR-FGVAIIIAADSSVGAQHFAIDRGEAVENPVKIESLIQMLPSF 686
            YLLN KR ++   E R  GV  +I  +  +   H+ + R   V    +  +L  MLP  
Sbjct: 449 SYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLR---VRKGEETPTLSYMLPKL 505

Query: 687 VEEEDDIVIEVE--EDEEEEEIVKAESAQPRQQPQG------------------------ 720
            EE   +  E E  E +  E+   A  A P   P                          
Sbjct: 506 HEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKSAPATPAAP 565

Query: 721 -----------------DNGEDGK------RKRKRRRRRRGKGGQNEQNGALDGQSGNDA 757
                              GE+ K       K + +  R+    +  QN   D     D 
Sbjct: 566 AQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRKPRQNNRRDRNERRDP 625

Query: 758 EDDDAEGDDDGVE-----------TDEAGADSDENGANEAANADEDGKRKRRRRGKR--G 804
             +  EG D+  E           T E      +    E A   ++ +  RR R +R   
Sbjct: 626 RSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTDEQQTPRRERSRRRND 685

Query: 805 GRRNRDDALDAAGADGETEGEGAEGEEVSTAAP----------------VTEEPATAAEV 848
            +R     + A   + ++  E  + E V    P                V EE   A  V
Sbjct: 686 DKRQAQQEVKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVV 745

Query: 849 VEGVVADVVAEEAPKKPRRTRKAKTKTETETEEAPK 884
            E V A+ + +EAP    RT   K       + AP+
Sbjct: 746 EETVAAEPIVQEAPAP--RTELVKVPLPVVAQTAPE 779



 Score = 86.3 bits (212), Expect = 1e-20
 Identities = 40/76 (52%), Positives = 54/76 (71%)

Query: 4  KMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYGG 63
          +MLI+A+ +EE RV +V G R+ + D ES   +Q + NIY  K+TR+EPSL+AAFVDYG 
Sbjct: 3  RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62

Query: 64 NRHGFLAFAEIHPDYY 79
           RHGFL   EI  +Y+
Sbjct: 63 ERHGFLPLKEIAREYF 78