Pairwise Alignments

Query, 784 a.a., exoribonuclease from Agrobacterium fabrum C58

Subject, 808 a.a., exoribonuclease II (RefSeq) from Shewanella amazonensis SB2B

 Score =  370 bits (951), Expect = e-106
 Identities = 269/765 (35%), Positives = 380/765 (49%), Gaps = 45/765 (5%)

Query: 36  VPSREVLLKFIADHPQQASKREIAKAFGLKGENRI-VLKALLKELEVDGMVHKSRKSLTR 94
           +PSRE +L+++        +  IA+A  +  E R+  L+  L+ +E DG +  +R     
Sbjct: 18  IPSREFILEYLRSQTSPQPRDSIAEALKIHDEERLEALRRRLRAMERDGELVFTRGQCY- 76

Query: 95  PGGLPPVTVLDITT--RDKDGELIGRPAEWPEDMGAAPAVLIRQSSQDRGKKAPAAGLGD 152
             GLP    L   T    KDG    RP    +D+       I +              GD
Sbjct: 77  --GLPERMDLMSGTVLGHKDGFGFFRPDNGGDDL------FINERDMQLYFH------GD 122

Query: 153 RILAKIFPSKDTVGPAYTARVVKLIDRRQNALLGVFKQTEGGGGRLMPIDRRGEEMVIDP 212
           ++LA+     D  G    AR+V+L+  R  AL+G F    G    +    R   E++I  
Sbjct: 123 KVLAQK-AGVDRRGRR-DARIVRLLSERSAALVGRFYVDAGMAFVVADDKRIPHEILIAN 180

Query: 213 DGVGDAKDGDLIEVETSRNSGRYGLTRAKVLSVVGSVASEKAISMIAIYAHGIPH----I 268
           +    A+ GD++ +E +R  GRY     KV  V+G   +      IA+  + +PH    +
Sbjct: 181 EDKNGARHGDVVVIELTRRPGRYVRAGGKVTEVLGKQMAPGMEIEIALRNYDLPHQWSAV 240

Query: 269 FPPNVLAEADAAKAATMSHREDWRDLPLITIDPADAKDHDDAVYAELDPSPDNPDGVIVT 328
               +    D         R D R+LPL+TID  DA+D DDAVYAE         G  + 
Sbjct: 241 IEKKLRRIPDYVTDEDKEGRVDLRELPLVTIDGEDARDFDDAVYAERKRG----GGWRLW 296

Query: 329 VAIADVSWYVRPGAPLDREALKRGNSVYFPDRVVPMLPERISNDLCSLKEGVDRPALAVR 388
           VAIADVS YVR  + LD+EA  RGNSVYFP +V+PMLPE++SN LCSL  GVDR  +   
Sbjct: 297 VAIADVSHYVRTDSALDKEARARGNSVYFPSQVIPMLPEKLSNGLCSLNPGVDRLCMVAE 356

Query: 389 MTFSKEGRKASHTFHRIMMKSAAKLSYQQAQAAIDGNPDDKTGTLLEPILKPLWHAYEVM 448
           MT S +G  + + F+  +M S A+ +Y Q  A ++G         L P LK L   Y  +
Sbjct: 357 MTISAKGGLSGYKFYPAVMHSHARFTYTQVAAMLEGGEVKDEHKALFPHLKVLQELYLCL 416

Query: 449 KRGRDRRQPLELDMPERKIQLRPDGTVDKVVIPERLDAHKLIEEMMIQANVAAAETLETK 508
              R  R  +  +  E +        +D++V   R  AHK+IEE MI ANVAAA+ +   
Sbjct: 417 DEQRAERGAIAFETLETQFIFNEQRKIDRIVPRARNQAHKIIEECMILANVAAAKFVIKH 476

Query: 509 KQRLVYRVHDAPTLSKQEVLREFLGTIGISMAKGVAMRANSFNGILARALDTPHQIMVNE 568
           K  ++YRVH+ P+  K    ++FL   G+SM  G+      +  ++A+    P   ++  
Sbjct: 477 KGHVLYRVHEKPSEQKLTQFKDFLAERGLSMTGGLEPEPADYLALMAQLAGRPDAELIQV 536

Query: 569 MVLRSQSQAIYSPENIGHFGLNLMKYAHFTSPIRRYADLIVHRAL----------VGSLG 618
           M+LRS  QA+Y+P+N GHFGL L  Y+HFTSPIRRY DL++HR +               
Sbjct: 537 MLLRSMRQAVYTPDNEGHFGLALEAYSHFTSPIRRYPDLVLHRVIRYLLAKERGEASEKW 596

Query: 619 LGEGGITPQEEATLDDIAAEISTFERRAMAAERDTVNRLIAHHLSERVGEEFEGRVGGVT 678
             +GG   Q E  LD +  E S  ERRA  A RD  + L    + + VG+ F G +  VT
Sbjct: 597 TADGGYHYQLE-ELDLLGEECSNTERRADEATRDVSDWLKCEFMQDHVGDSFSGVIASVT 655

Query: 679 KAGLFVALPQFGADGFVPISTLGTDYFFYDEAHQALTGEKTGLGYQLGDTVQVRLAEAVP 738
             GLFV L +   DG V IS+LG+DYF YD   Q L GE +G  YQ+GD V V++A +V 
Sbjct: 656 SFGLFVRLDELFIDGLVHISSLGSDYFQYDPQRQRLIGENSGQIYQIGDPVAVKVA-SVN 714

Query: 739 LAGA---LRFEMLSPGRKMPVGSRSFHKAGRRTSRPGAKPGTRPP 780
           L      L+ E   PGRK     +    A  R +  GA+ G   P
Sbjct: 715 LDDRQIDLQMEGERPGRKK--AGKKPTTARDRANLEGARTGNGKP 757