Pairwise Alignments

Query, 784 a.a., exoribonuclease from Agrobacterium fabrum C58

Subject, 824 a.a., ribonuclease R (RefSeq) from Shewanella loihica PV-4

 Score =  366 bits (939), Expect = e-105
 Identities = 252/716 (35%), Positives = 366/716 (51%), Gaps = 39/716 (5%)

Query: 36  VPSREVLLKFIADHPQQASKREIAKAFGLKGENRI-VLKALLKELEVDGMVHKSRKSLTR 94
           +PSRE +L ++       ++ +IA+A  +  E ++  L+  L+ +E DG +  +R     
Sbjct: 18  IPSREYILDYLRSQQSPLNREKIAQALNISDEEQLEALRRRLRAMERDGELVFTRGQAY- 76

Query: 95  PGGLPP-VTVLDITTRD-KDGELIGRPAEWPEDMGAAPAVLIRQSSQDRGKKAPAAGLGD 152
             GLP  + +L  T    KDG    +  E  +D+      ++                GD
Sbjct: 77  --GLPERMDLLSGTVLGHKDGFGFLKLDEGGDDLFINNRDMLMYFH------------GD 122

Query: 153 RILAKIFPSKDTVGPAYTARVVKLIDRRQNALLGVFKQTEGGGGRLMPIDRRGEEMVIDP 212
           ++LA+     D  G    AR+V+L   R   L+G F    G    +    R  +E++I  
Sbjct: 123 KVLAQK-AGVDRKGRR-EARIVRLTHERTAPLVGRFHLDSGMAFVITDDKRITQEILIPD 180

Query: 213 DGVGDAKDGDLIEVETSRNSGRYGLTRAKVLSVVGSVASEKAISMIAIYAHGIPHIFPPN 272
           D    A+ GD++ +E +R  GRY     KV  V+G   +      IA+  + +PH +   
Sbjct: 181 DDRNGARQGDVVVIELTRRPGRYMKAAGKVTEVLGKEMAPGMEIEIALRNYDLPHTWSSL 240

Query: 273 VLAEA----DAAKAATMSHREDWRDLPLITIDPADAKDHDDAVYAELDPSPDNPDGVIVT 328
           +  +     D         R D R LPL+TID  DA+D DDAVYAE   S     G  + 
Sbjct: 241 IEKKLRKIPDEVTEEDKLGRVDLRKLPLVTIDGEDARDFDDAVYAETKKS----GGWRLW 296

Query: 329 VAIADVSWYVRPGAPLDREALKRGNSVYFPDRVVPMLPERISNDLCSLKEGVDRPALAVR 388
           VAIADVS YVR  + LD+EA  RGNSVYFP +V+PMLPE++SN LCSL  GVDR  +   
Sbjct: 297 VAIADVSHYVRTESALDKEARARGNSVYFPSQVIPMLPEKLSNGLCSLNPGVDRLCMVAE 356

Query: 389 MTFSKEGRKASHTFHRIMMKSAAKLSYQQAQAAIDGNPDDKTGTLLEPILKPLWHAYEVM 448
           MT S  G+ + + F+  +M S A+L+Y Q    ++G         L P L+ L   Y  +
Sbjct: 357 MTISAAGKLSGYKFYPAVMHSHARLTYTQVAEMLEGGEVSDELKPLFPHLQTLQSLYLTL 416

Query: 449 KRGRDRRQPLELDMPERKIQLRPDGTVDKVVIPERLDAHKLIEEMMIQANVAAAETLETK 508
              R +R  +  +  E +     D  ++++    R  AHK+IEE MI ANVAAA+ ++  
Sbjct: 417 DDTRAQRGAIAFETTETQFIFNADRKIERIEPRTRNQAHKIIEECMILANVAAAKFVKKH 476

Query: 509 KQRLVYRVHDAPTLSKQEVLREFLGTIGISMAKGVAMRANSFNGILARALDTPHQIMVNE 568
           K  ++YRVH+AP+  K    ++FL   G+SM  G+      +  ++ + +D P   ++  
Sbjct: 477 KGEVLYRVHEAPSEQKLTNFKDFLKERGLSMGGGLEPEPADYQALMEQVVDRPDAELIQV 536

Query: 569 MVLRSQSQAIYSPENIGHFGLNLMKYAHFTSPIRRYADLIVHRAL----------VGSLG 618
           M+LRS  QA Y+P+N GHFGL L +Y+HFTSPIRRY DLI+HR +               
Sbjct: 537 MLLRSMRQATYTPDNEGHFGLALEEYSHFTSPIRRYPDLILHRVIRYLLAKERGEASDKW 596

Query: 619 LGEGGITPQEEATLDDIAAEISTFERRAMAAERDTVNRLIAHHLSERVGEEFEGRVGGVT 678
             +GG   Q E  LD +  E S  ERRA  A RD  + L    + + VG+ FE  +  VT
Sbjct: 597 TPDGGYHYQIE-ELDLLGEECSNTERRADEATRDVSDWLKCEFMRDHVGDTFEAVIASVT 655

Query: 679 KAGLFVALPQFGADGFVPISTLGTDYFFYDEAHQALTGEKTGLGYQLGDTVQVRLA 734
             G+FV L     DG V ISTLG DY+ YD   Q L GE +G  YQ+GD V V++A
Sbjct: 656 HFGMFVRLSDLFIDGLVHISTLGGDYYHYDNMRQRLVGEASGQVYQIGDPVTVKVA 711