Pairwise Alignments

Query, 784 a.a., exoribonuclease from Agrobacterium fabrum C58

Subject, 839 a.a., ribonuclease R from Herbaspirillum seropedicae SmR1

 Score =  362 bits (929), Expect = e-104
 Identities = 253/798 (31%), Positives = 386/798 (48%), Gaps = 69/798 (8%)

Query: 36  VPSREVLLKFIADHPQQASKREIAKAFGLKGENRIVLKALLKELEVDGMVHKSRKSLTRP 95
           +PSRE +L  +       +   +A A G+K E    L   L  +E DG +   R    + 
Sbjct: 8   IPSREEILGILRTSSGAQNAAALAAALGVKPEEMDGLTRRLNAMERDGQIKPDRAGHYKL 67

Query: 96  GGLPPVTVLDITTRDKDGELIGRPAEWPEDMGAAPAVLIRQSSQDRGKKAPAAGLGDRIL 155
              P   +L   +  +DG     P +  +D+                K+      GDR+ 
Sbjct: 68  THSPDF-ILGRVSSHRDGFGFLLPDDGSDDLFLPE------------KEMQKVMHGDRVQ 114

Query: 156 AKIFPSKDTVGPAYTARVVKLIDRRQNALLGVFKQTEGGGGRLMPIDRRGEEMVIDPDGV 215
           A+I  +     P  T  +V++++R    ++G     E G   + P D+R    V+     
Sbjct: 115 ARIVGTDRRGRPEGT--IVEVVERANTHVIGRLLN-ENGVWIVAPEDKRIGHDVLLAGPP 171

Query: 216 GDAKDGDLIEVETSRNSGRYGLTRAKVLSVVGSVASEKAISMIAIYAHGIPHIFPPNVLA 275
           G AK G ++ VE + +  RY     K++ ++G +        IA+  +G+PH F      
Sbjct: 172 GKAKAGQVVSVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEFSEAAKK 231

Query: 276 EA----DAAKAATMSHREDWRDLPLITIDPADAKDHDDAVYAELDPSPDNPDGVIVTVAI 331
            +       KAA +  R D RD+PL+TID  DA+D DDAVY E         G  + VAI
Sbjct: 232 LSAKLPSEVKAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCE-PVKIGRTKGYRLIVAI 290

Query: 332 ADVSWYVRPGAPLDREALKRGNSVYFPDRVVPMLPERISNDLCSLKEGVDRPALAVRMTF 391
           ADVS YV+P   LD +AL+R  SVYFP RV+PMLPE++SN LCSL   VDR  L      
Sbjct: 291 ADVSHYVKPNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVI 350

Query: 392 SKEGRKASHTFHRIMMKSAAKLSYQQAQAAIDGN--PDDKTGTLLEPILKPLWHAYEVMK 449
           + +G   ++ F+  ++ SAA+L+Y +  + +     P+      L P L  L+  ++ + 
Sbjct: 351 TAKGEIKAYQFYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEVFQALL 410

Query: 450 RGRDRRQPLELDMPERKIQLRPDGTVDKVVIPERLDAHKLIEEMMIQANVAAAETLETKK 509
             R  R  ++ +  E  I     G ++K++   R DAH+LIEE M+ ANV AA+ L+   
Sbjct: 411 TARQARGAIDFETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANVCAADLLKRHD 470

Query: 510 QRLVYRVHDAPTLSKQEVLREFLGTIGISMAKGVAMRANSFNGILARALDTPHQIMVNEM 569
              +YR+H  PT  K   LR FL  +G+++  G    A+ +  ++ +    P  +++  M
Sbjct: 471 HPALYRIHAGPTKEKLTTLRTFLKQVGLTLGGGDTPSASDYAELMPKVKARPDAVLIQTM 530

Query: 570 VLRSQSQAIYSPENIGHFGLNLMKYAHFTSPIRRYADLIVHRALVGSL--------GLGE 621
           +LRS  QA+YSP+NIGHFGL+   YAHFTSPIRRY DL+ HRA+   L        G+  
Sbjct: 531 LLRSMQQAVYSPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQGKRYEPKGIDS 590

Query: 622 G------------------------GITPQEEATL---DDIAAEISTFERRAMAAERDTV 654
           G                        G  P+ E+ L   + +    S  ERRA  A RD  
Sbjct: 591 GALNTSISPAARKAQAQQRAADKAAGKKPRGESALAIWEALGLHCSANERRADEASRDVE 650

Query: 655 NRLIAHHLSERVGEEFEGRVGGVTKAGLFVALPQFGADGFVPISTLGTDYFFYDEAHQAL 714
             L  + + +++GEEF G + GV   G+FV L     +G V ++ LG DYF YDEA   L
Sbjct: 651 AWLKCYFIRDKLGEEFTGTISGVATFGIFVQLDALYIEGLVHVTELGADYFQYDEARHEL 710

Query: 715 TGEKTGLGYQLGDTVQVRL------AEAVPLA----GALRFEMLSPGRKMPVGSRSFHKA 764
            GE+TG+ YQL D V V++      A  + L+      +R  + +  ++    +RS   A
Sbjct: 711 RGERTGIRYQLTDRVTVQVSRVDLDARKIDLSLVNEPGIRTLLKNEAKRAESAARS-KSA 769

Query: 765 GRRTSRPGAKPGTRPPRG 782
           G R ++  ++P  R  +G
Sbjct: 770 GGRQAQEASQPAARGKKG 787