Pairwise Alignments

Query, 405 a.a., DNA polymerase IV from Agrobacterium fabrum C58

Subject, 355 a.a., DNA polymerase IV (RefSeq) from Shewanella amazonensis SB2B

 Score =  201 bits (510), Expect = 4e-56
 Identities = 126/334 (37%), Positives = 186/334 (55%), Gaps = 8/334 (2%)

Query: 23  IAHIDCDAFYASVEKRDNPELADKPVIVGGG--KRGVVSTACYIARIHGVRSAMPMFKAL 80
           I HID D ++A+VE RD P+   KP+ VGG   +RGV+ST  Y AR  GVRSAM    AL
Sbjct: 4   IIHIDMDCYFAAVEMRDFPQYRGKPLAVGGSSDRRGVISTCNYEARAFGVRSAMASAYAL 63

Query: 81  EACPDAVVIKPDMEKYSRVGREIRTMMQELTPLVQPLSIDEAFLDLSGTEKLHHDPPARV 140
           + CP+ +++   ME Y  V ++IR +    T L++PLS+DEA+LD+S    L+     R+
Sbjct: 64  KLCPNLILVPGRMEVYKAVSQQIREIFSRYTSLIEPLSLDEAYLDVSDCS-LYQGSATRI 122

Query: 141 LAKFTGRVEKEVGVSVSAGLSYCKFLAKVASDLQKPRGFSVVGEAEALSFLAARPVTTIW 200
                  + KE G++ SAG+S  KF+AKVASDL KP G  VV     + F+ A  +  I 
Sbjct: 123 AEAIRSDIFKETGLTASAGVSPIKFVAKVASDLNKPNGQYVVSPDTLMHFVRALSLGKIP 182

Query: 201 GVGKAFAATLEADGIRMIAQLQEMEESELMRRYGVMGQRLFRLARGIDERHVHNNDPVKS 260
           GVGK     L A G++  A +Q++ ++ L   +G  G  L+  A G DER + ++   KS
Sbjct: 183 GVGKVTEEKLNALGLKTCADVQQVPQTLLTEHFGKFGAVLYERAHGRDERAIVSHRERKS 242

Query: 261 VSSETTFFHDISRHEDLVPILRSLSEKVAWRLKK--SGIAGQTVVLKMKTADFKSRTRNR 318
           V  ETT   D+   E  + +L SL  ++  RL +  SG     +V+K+K  DF+  T   
Sbjct: 243 VGVETTLPKDLHTREACLDVLSSLIPELNRRLGRSASGRRIHKLVVKLKFDDFRQTTIES 302

Query: 319 RLDDPTQLADRIFRTGLALLEKETDGTKFRLIGI 352
           R ++P+    R+F + L+      +G   RL+GI
Sbjct: 303 RAEEPSV---RLFESLLSQAFVRAEGRGIRLVGI 333