Pairwise Alignments

Query, 405 a.a., DNA polymerase IV from Agrobacterium fabrum C58

Subject, 357 a.a., DNA-damage-inducible protein P (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  196 bits (498), Expect = 9e-55
 Identities = 130/354 (36%), Positives = 186/354 (52%), Gaps = 9/354 (2%)

Query: 23  IAHIDCDAFYASVEKRDNPELADKPVIVGGGK--RGVVSTACYIARIHGVRSAMPMFKAL 80
           I H+D D ++A+VE RD PE   KP+ VGG +  RGV+ST  Y AR  GVRSAM    A 
Sbjct: 4   IIHVDMDCYFAAVEMRDFPEYRGKPLAVGGSRERRGVISTCNYEARRFGVRSAMATAYAQ 63

Query: 81  EACPDAVVIKPDMEKYSRVGREIRTMMQELTPLVQPLSIDEAFLDLSGTEKLHHDPPARV 140
           + CPD +++   M+ Y  V  +IR +    T L++PLS+DEA+LD+S   KLH      +
Sbjct: 64  KLCPDLILVPGRMQVYKDVSSQIRAIFSRYTELIEPLSLDEAYLDVSDC-KLHKGSATLI 122

Query: 141 LAKFTGRVEKEVGVSVSAGLSYCKFLAKVASDLQKPRGFSVVGEAEALSFLAARPVTTIW 200
                  +  E G++ SAG++  KFLAKVASDL KP G  V+   +   F+    +  I 
Sbjct: 123 AEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPPDKVPEFIRTLSLRQIP 182

Query: 201 GVGKAFAATLEADGIRMIAQLQEMEESELMRRYGVMGQRLFRLARGIDERHVHNNDPVKS 260
           GVGK  A  L + G+     +Q   + EL+ R+G  G  L   A+GID+R +  +   KS
Sbjct: 183 GVGKVTAEKLSSLGLNTCGDVQTYPKQELITRFGKFGAVLIERAQGIDDRGLSVSRERKS 242

Query: 261 VSSETTFFHDISRHEDLVPILRSLSEKVAWRLKKSGIAGQ--TVVLKMKTADFKSRTRNR 318
           V  ETT   DI   E    ++  L ++++ RL +S    Q    V+K+K +DFK  T   
Sbjct: 243 VGVETTLAQDIYTLEQCQQVMPGLIQELSTRLSRSAKDRQIHKQVVKLKFSDFKQTTIEH 302

Query: 319 RLDDPTQLADRIFRTGLALLEKETDGTKFRLIGIGVSDLRDAGLADPPDLVDRQ 372
           R +D + +   +F   LA      DG   RL+G+ V  L D  L    D +  Q
Sbjct: 303 RSNDVSVM---MFYELLAQAIARQDGRGIRLLGVAVG-LSDKSLISEVDPLQTQ 352