Pairwise Alignments

Query, 405 a.a., DNA polymerase IV from Agrobacterium fabrum C58

Subject, 384 a.a., DNA-directed DNA polymerase from Herbaspirillum seropedicae SmR1

 Score =  176 bits (447), Expect = 8e-49
 Identities = 122/364 (33%), Positives = 180/364 (49%), Gaps = 30/364 (8%)

Query: 20  DLSIAHIDCDAFYASVEKRDNPELADKPVIVGGGK----------------------RGV 57
           D  IAH+D DAFYASVE    P+L  + V++GGG                       RGV
Sbjct: 4   DRRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAGRGV 63

Query: 58  VSTACYIARIHGVRSAMPMFKALEACPDAVVIKPDMEKYSRVGREIRTMMQELTPLVQPL 117
           V+T+ Y AR  GV SAM + KA +  PDA+++  D E Y +  R  +  ++ + PL++  
Sbjct: 64  VTTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVRNIAPLIEDR 123

Query: 118 SIDEAFLDLSGTEKLHHDPPARVLAKFTGRVEKEVGVSVSAGLSYCKFLAKVASDLQKPR 177
            IDE ++DLS       D    V  +    V     ++ S G++  K LAK++S+L KP 
Sbjct: 124 GIDEIYIDLSAWS----DTAPEVARQIKDAVHAATSLTCSIGVAPNKMLAKISSELDKPN 179

Query: 178 GFSVVGEAEALSFLAARPVTTIWGVGKAFAATLEADGIRMIAQLQEMEESELMRRYG-VM 236
           G +++  A+    +   PV  I G+G   A  L A GI  +A L       L   +G   
Sbjct: 180 GLTILTPADIERRIWPLPVRKINGIGPKAAEKLSALGIDTVADLAGAAPDLLRAHFGRSY 239

Query: 237 GQRLFRLARGIDERHVHNNDPVKSVSSETTFFHDISRHED---LVPILRSLSEKVAWRLK 293
            + L R+A+G+D+R V      KS+S ETTF  D+    D   L  I  +L  K+A  L 
Sbjct: 240 AEWLGRVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRAQLSEIFTALCVKLAADLD 299

Query: 294 KSGIAGQTVVLKMKTADFKSRTRNRRLDDPTQLADRIFRTGLALLEKETDGTKFRLIGIG 353
           + G  G+T+ +K+K ADF+  TR+  L  PT  A  I +     L++     K RL+G+ 
Sbjct: 300 RKGYVGRTIGIKLKYADFRGVTRDVTLPSPTGDAAAIRQAAGECLKRVPLDKKLRLLGVR 359

Query: 354 VSDL 357
           V  L
Sbjct: 360 VGAL 363