Pairwise Alignments

Query, 405 a.a., DNA polymerase IV from Agrobacterium fabrum C58

Subject, 417 a.a., DNA-directed DNA polymerase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  429 bits (1104), Expect = e-125
 Identities = 225/401 (56%), Positives = 282/401 (70%), Gaps = 1/401 (0%)

Query: 3   RCRACGSPRLLYHSELYDLSIAHIDCDAFYASVEKRDNPELADKPVIVGGGKRGVVSTAC 62
           RC  CGSPR++ H+EL  L+IAH+DCDAF+ASVEKRDNP LAD+PVI+GGG+RGVVSTAC
Sbjct: 17  RCARCGSPRIVAHAELDTLTIAHMDCDAFFASVEKRDNPALADRPVIIGGGRRGVVSTAC 76

Query: 63  YIARIHGVRSAMPMFKALEACPDAVVIKPDMEKYSRVGREIRTMMQELTPLVQPLSIDEA 122
           Y+ARI GVRSAMPMFKAL  CPDAVVIKP  E Y    R IR MM E+TP V+PLS+DEA
Sbjct: 77  YVARIKGVRSAMPMFKALALCPDAVVIKPRFEAYVEASRAIRAMMDEMTPDVEPLSLDEA 136

Query: 123 FLDLSGTEKLHHDPPARVLAKFTGRVEKEVGVSVSAGLSYCKFLAKVASDLQKPRGFSVV 182
           F+DL GT +LH  PPA +LA+   R+E E+G++ S GLS+ KFLAK+ASDL KPRGF+V+
Sbjct: 137 FMDLGGTARLHGAPPAVMLARLVKRMEDELGLTGSIGLSHNKFLAKIASDLDKPRGFAVI 196

Query: 183 GEAEALSFLAARPVTTIWGVGKAFAATLEADGIRMIAQLQEMEESELMRRYGVMGQRLFR 242
           G+AE L FLA +PV  IWGVG A  A LEA GIR    L   E+++L+ R+G MG RL+ 
Sbjct: 197 GKAETLDFLADKPVRMIWGVGAAGQAALEAAGIRTFTDLARWEQTDLVARFGSMGLRLWH 256

Query: 243 LARGIDERHVHNNDPVKSVSSETTFFHDISRHEDLVPILRSLSEKVAWRLKKSGIAGQTV 302
           LARG D R V    PVKS+S+ETTF  D +  + L   +  ++EKVA R K  G+AG+ V
Sbjct: 257 LARGEDARAVSGRSPVKSISNETTFSEDTADPDLLEGHVWRMAEKVAGRAKAQGLAGRVV 316

Query: 303 VLKMKTADFKSRTRNRRLDDPTQLADRIFRTGLALLEKETDGTKFRLIGIGVSDLRDAGL 362
           VLK+K +D    TR   L D TQ+ADR+FR  +AL     DG  +RL+G+G+SDL     
Sbjct: 317 VLKLKKSDHGLITRRHALRDATQIADRVFREAMALFRAVPDGQSYRLLGVGLSDLVPEDG 376

Query: 363 AD-PPDLVDRQATRRAAAEAAMDKLRDKFGKGSVETGYTFR 402
            D   DL+D  A RRA AE A D +R +FG+ ++  G   R
Sbjct: 377 GDLSGDLLDPGAVRRARAERATDAIRARFGETAIVKGRALR 417