Pairwise Alignments

Query, 405 a.a., DNA polymerase IV from Agrobacterium fabrum C58

Subject, 359 a.a., DNA polymerase IV (RefSeq) from Shewanella sp. ANA-3

 Score =  196 bits (499), Expect = 7e-55
 Identities = 131/349 (37%), Positives = 186/349 (53%), Gaps = 14/349 (4%)

Query: 23  IAHIDCDAFYASVEKRDNPELADKPVIVGGGK--RGVVSTACYIARIHGVRSAMPMFKAL 80
           I HID D ++A+VE RD PE   KP+ VGG +  RGV+ST  Y AR  GVRSAM    AL
Sbjct: 4   IIHIDMDCYFAAVEMRDFPEYRGKPLAVGGSRVQRGVISTCNYEARKFGVRSAMATGYAL 63

Query: 81  EACPDAVVIKPDMEKYSRVGREIRTMMQELTPLVQPLSIDEAFLDLSGTEKLHHDPPARV 140
           + CPD +++   M+ Y  V ++IR +    T L++PLS+DEA+LD+S   KL       +
Sbjct: 64  KLCPDLILVPGRMQVYKEVSQQIRAIFCRYTELIEPLSLDEAYLDVSDC-KLFKGSATLI 122

Query: 141 LAKFTGRVEKEVGVSVSAGLSYCKFLAKVASDLQKPRGFSVVGEAEALSFLAARPVTTIW 200
                  +  E G++ SAG++  KFLAKVASDL KP G  V+   E   F+ +  +  I 
Sbjct: 123 AEAIRRDILAETGLTASAGVAPIKFLAKVASDLNKPNGQCVIPPDEVAEFVKSLSLRKIP 182

Query: 201 GVGKAFAATLEADGIRMIAQLQEMEESELMRRYGVMGQRLFRLARGIDERHVHNNDPVKS 260
           GVGK  A  L + G+   A +Q   + EL+ R+G  G  L   A GIDER +  +   KS
Sbjct: 183 GVGKVTAEKLSSLGLNTCADVQAYPKQELIARFGKFGTVLVERAHGIDERGISVSRERKS 242

Query: 261 VSSETTFFHDISRHEDLVPILRSLSEKVAWRLKKSGIAGQ--TVVLKMKTADFKSRTRNR 318
           V  ETT   DI   E    ++  L ++++ RL +S    Q    V+K+K  DFK  T   
Sbjct: 243 VGVETTLAQDIYTLEQCQQVMPGLIQELSSRLGRSAKGRQIHKQVVKLKFNDFKQTTIEH 302

Query: 319 RLDDPTQLADRIFRTGLALLEKETDGTKFRLIGIGVSDLRDAGLADPPD 367
           R D+ + +   +F   L+      +G   RL+G+ V      GLA+  D
Sbjct: 303 RSDEVSVV---MFYELLSQAMARQEGRGIRLLGVSV------GLAESKD 342