Pairwise Alignments

Query, 163 a.a., NADH ubiquinone oxidoreductase chain I from Agrobacterium fabrum C58

Subject, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 46.6 bits (109), Expect = 5e-10
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVK-CIYCGFCQEAC 113
           R+P  +  C+ C+ C  ICPA+ I++     +        +  I + K C+ CG C   C
Sbjct: 83  RFPYSKGHCVLCEKCVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPEC 142

Query: 114 PVDAI 118
           PVDAI
Sbjct: 143 PVDAI 147



 Score = 42.4 bits (98), Expect = 9e-09
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 12/56 (21%)

Query: 63  CIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118
           C+AC +C   CP  AI+IE                ID  KCIYC  C + CP +AI
Sbjct: 132 CVACGVCVPECPVDAISIEDIAV------------IDTDKCIYCTVCSQTCPWNAI 175



 Score = 39.3 bits (90), Expect = 8e-08
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 11/63 (17%)

Query: 61  ERCIACKLCEAICPAQAITIE-----AGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPV 115
           E C AC LC   CP + I++E     A P  ++G   +        KC YCG C   CP 
Sbjct: 227 EACPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWSEE------KCAYCGPCAIKCPT 280

Query: 116 DAI 118
            AI
Sbjct: 281 GAI 283



 Score = 38.5 bits (88), Expect = 1e-07
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACP 114
           ++CI C +C   CP  AI + AG       +    + ++  +CI C  C EACP
Sbjct: 158 DKCIYCTVCSQTCPWNAIFV-AGKLPQKRQKTIKSFTVNEEECIGCEKCVEACP 210



 Score = 38.5 bits (88), Expect = 1e-07
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 21/102 (20%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFC 109
           +  ++ +   EE CI C+ C   CP   I         +G +  V+       C  CG C
Sbjct: 186 QKTIKSFTVNEEECIGCEKCVEACPGSMI-------EYNGEKLGVKLP---EACPACGLC 235

Query: 110 QEACPVDAIVEGPNFEFATETREELYFDKQRLLDNGDRWERE 151
            E+CPV+ I           + E  Y   + + D G  W  E
Sbjct: 236 VESCPVEVI-----------SLEVEYASAKPVTDEGLVWSEE 266



 Score = 37.4 bits (85), Expect = 3e-07
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 17/61 (27%)

Query: 60  EERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIV 119
           E+ C+ C  C   CP +A  IE  P +                CI C  C  ACP  A+V
Sbjct: 8   EDACLVCNACAKACPTEA--IEIAPFKT---------------CIQCFSCATACPTGALV 50

Query: 120 E 120
           E
Sbjct: 51  E 51



 Score = 36.6 bits (83), Expect = 5e-07
 Identities = 18/62 (29%), Positives = 25/62 (40%)

Query: 60  EERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIV 119
           EE+C  C  C   CP  AI +         +++      +   CI CG C   CP  A+ 
Sbjct: 265 EEKCAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRCGACAMKCPTGALK 324

Query: 120 EG 121
            G
Sbjct: 325 MG 326



 Score = 32.3 bits (72), Expect = 9e-06
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 11/53 (20%)

Query: 63  CIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPV 115
           CI C  C   CP  A+  + G    +G+           KC   G CQ+ACPV
Sbjct: 34  CIQCFSCATACPTGALVEKDGKLVFNGS-----------KCDLDGACQKACPV 75



 Score = 31.6 bits (70), Expect = 2e-05
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 63  CIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACP 114
           CI C  C   CP  A+ +  G   ++G +   R +     C  CG C + CP
Sbjct: 308 CIRCGACAMKCPTGALKM--GKMVHEG-KEYARVEFSPALCNECGECVDVCP 356