Pairwise Alignments

Query, 163 a.a., NADH ubiquinone oxidoreductase chain I from Agrobacterium fabrum C58

Subject, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 50.8 bits (120), Expect = 3e-11
 Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 13/85 (15%)

Query: 60  EERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVD-AI 118
           EE C++C  CE  CP  AI+       N G      Y+ID+  C+ C  C +ACPV+ AI
Sbjct: 125 EEVCVSCGTCENACPVDAIS-----HNNTGL-----YEIDVNLCVSCKNCLKACPVENAI 174

Query: 119 V--EGPNFEFATETREELYFDKQRL 141
           V    P      E  + + FD++RL
Sbjct: 175 VTYSEPELSEKIEIAQNIKFDRERL 199



 Score = 48.9 bits (115), Expect = 1e-10
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 16/85 (18%)

Query: 60  EERCIACKLCEAICPA-QAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118
           EE+CI C++C   C   +AI I         ++ T    I+   C+ CG CQ ACPVDAI
Sbjct: 280 EEKCIGCRICYRSCNVPEAILI---------SKETNLPYINPEYCVRCGLCQNACPVDAI 330

Query: 119 VEGPNFEFATETREELYFDKQRLLD 143
                    TET E+LY  K+++ D
Sbjct: 331 -----DYLKTETSEDLY-SKRKIRD 349



 Score = 44.3 bits (103), Expect = 2e-09
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120
           E+CI+C  C+  CP+ AI++E     N+  ++ +    D   CI CG C E+CP + +  
Sbjct: 47  EKCISCSACKESCPSDAISMEF----NEEFKKEMPV-FDAGSCINCGNCVESCPTNVLEM 101

Query: 121 G 121
           G
Sbjct: 102 G 102



 Score = 41.2 bits (95), Expect = 2e-08
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 63  CIACKLCEAICPAQAITIEAGPRRNDGTR------RTVRYDIDMVKCIYCGFCQEACPVD 116
           CI C  C   CP   +  E G  R +         + +   ID   C+ CG C+ ACPVD
Sbjct: 84  CINCGNCVESCPTNVL--EMGTLRKEAKELLWNVPKIINLLIDEEVCVSCGTCENACPVD 141

Query: 117 AI 118
           AI
Sbjct: 142 AI 143



 Score = 33.5 bits (75), Expect = 4e-06
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 102 KCIYCGFCQEACPVDAIVEGPNFEFATETREEL-YFDKQRLLDNGD 146
           KCI C  C+E+CP DAI    + EF  E ++E+  FD    ++ G+
Sbjct: 48  KCISCSACKESCPSDAI----SMEFNEEFKKEMPVFDAGSCINCGN 89



 Score = 31.6 bits (70), Expect = 2e-05
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 16/80 (20%)

Query: 63  CIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVEGP 122
           CI C  C  +CP  +I +E                + +  CI  G C E CP  AI  G 
Sbjct: 221 CIGCGNCVDVCPG-SIDLER---------------LKVTSCIKSGKCLEVCPTTAIRIGV 264

Query: 123 NFEFATETREELYFDKQRLL 142
             +    T E    D+++ +
Sbjct: 265 PEKITKRTAECYIVDEEKCI 284