Pairwise Alignments

Query, 479 a.a., DNA photolyase from Agrobacterium fabrum C58

Subject, 461 a.a., cryptochrome DASH from Vibrio cholerae E7946 ATCC 55056

 Score =  123 bits (309), Expect = 1e-32
 Identities = 126/442 (28%), Positives = 187/442 (42%), Gaps = 61/442 (13%)

Query: 9   IVWFRKDLRLSDNLALLAAVEHGGPVIPVYI---------REKSAGPLGGAQEWWLHHSL 59
           + WF  DLR++DN  L  A +    +I +Y          R       G A++ +L+ +L
Sbjct: 7   LYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFLNQTL 66

Query: 60  AALSSSLEKAGGRLVLASGDAERILRDLISETGADTVVWNRRYDPTGMATDKALKQKLRD 119
           A L  SL   G +L +      + LR L+++     +      D    + ++    ++  
Sbjct: 67  ADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIY----VDAVAGSDERQAIARIHQ 122

Query: 120 DGLTVRSFSG---QLLHEPSRLQTKSGGPYRVYTPFWRALEGSDEPHAPADPPKSLTAPK 176
           D  +V         LL EP         P   +T F + +E             SL+AP 
Sbjct: 123 DFSSVHIHQQALHSLLSEPQLPFALEALP-STFTQFRKQVETI-----------SLSAPM 170

Query: 177 VWPKSEKLSNWKLLPTKPDWAKDFSDIWTP--------GETGALDKLDDFIDGALKG-YE 227
            +P         L P +  W     DI T         GE   L    ++    L   Y+
Sbjct: 171 GYPHV-------LPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSLLPSRYK 223

Query: 228 EGRD-FPAKPATSLLSPHLAAGEISPAAVWHATKGLSRHIASNDISRFRK-EIVWREFCY 285
           E R+       ++  SP LA G +SP  ++   +       +ND + +   E++WRE+ Y
Sbjct: 224 ETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDSTYWIFFELLWREYFY 283

Query: 286 HL-------LFHFPELGEKNWNDSFDAFSWRDDEKSFKAWTRGMTGYPIVDAGMRQLWQH 338
                    LF F  +GEK    SF A       + F  W  G T +PIV+A MRQL Q 
Sbjct: 284 WYARRYGAKLFRFSGIGEKKPLTSFYA-------QRFLQWKHGETPFPIVNACMRQLNQT 336

Query: 339 GTMHNRVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFF 398
           G M NR R +VAS L+  L +DWR G  +F   LVD D  SN  NWQ++AG GAD     
Sbjct: 337 GYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-S 395

Query: 399 RIFNPILQGEKFDGDGDYVRRF 420
           R FN   Q   +D  G++V ++
Sbjct: 396 RQFNLEKQAHTYDPKGEFVAKW 417