Pairwise Alignments

Query, 479 a.a., DNA photolyase from Agrobacterium fabrum C58

Subject, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

 Score =  115 bits (288), Expect = 3e-30
 Identities = 113/473 (23%), Positives = 200/473 (42%), Gaps = 48/473 (10%)

Query: 9   IVWFRKDLRLSDNLALLAAVEHGGPVIPVYIREKSAGPLGGA----QEW-WLHHSLAALS 63
           +VW ++DLRL+D+  L AA+  G P + +Y+ E     LG A    + W ++  SL A++
Sbjct: 6   LVWLKRDLRLTDHAPLQAALTSGRPTLLLYLFEPML--LGDAHYSERHWRFVWQSLQAIN 63

Query: 64  SSLEKAGGRLVLASGDAERILRDLISETGADTVVWNRRYDPTGMAT----DKALKQKLRD 119
             L ++ G +++ + D +     +      + +     +   G+A     D AL Q  + 
Sbjct: 64  RDLAQSKGEVLIVTSDWQTCFARIAERYAIEAIY---SHQEVGLACTFQRDLALAQWCQQ 120

Query: 120 DGLTVRSFSGQLLHEPSRLQTKSGGPYRVYTPFWRALEGSDEPHAPADPPKSLTAPKVWP 179
             +    F       P     +     + +   W+ +  S     P   P    A   W 
Sbjct: 121 HDIVWHEF-------PYAAVIRGAQTRKNWDEHWQQVMRS-----PCCDPDLTRAN--WL 166

Query: 180 KSEKLSNWKLLPTKPDWAKDFSDIWTPGETGALDKLDDFIDGALKGYEEGRDFP--AKPA 237
           K +  +          W    + + T G   A   L+DF     + Y      P  A+ A
Sbjct: 167 KLDAATLGLRSDIPATWQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHA 226

Query: 238 TSLLSPHLAAGEISPAAVWHATKGLSRHIASNDISRFRKEIVWREFCYHLLFHFPELGEK 297
            S +SP+LA G IS   ++     L +H +   ++ FR+ ++      H   HF +  E 
Sbjct: 227 CSRMSPYLAWGNISLREMYQT---LLKHWS---VAGFRRSLIALSSRLHWHCHFIQKFES 280

Query: 298 NW-------NDSFDAFSWRDDEK---SFKAWTRGMTGYPIVDAGMRQLWQHGTMHNRVRM 347
                    N ++D+   +  +       AW  G TG P+VDA MR L Q G ++ R+R 
Sbjct: 281 ECEMEFRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340

Query: 348 IVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQG 407
           ++ S L  H+ +DWR G  +     +D +P  +   +Q  A  G   +   RI+NP  Q 
Sbjct: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQA 398

Query: 408 EKFDGDGDYVRRFVPELEKLERKYIHKPFEAPKDALKKAGVELGKTYPLPIVD 460
           ++ D +G ++ ++VPEL ++    + +P+       +   V L   Y  P++D
Sbjct: 399 QEHDSEGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMD 451