Pairwise Alignments

Query, 421 a.a., GGDEF family protein from Agrobacterium fabrum C58

Subject, 496 a.a., diguanylate cyclase with PAS/PAC sensor (RefSeq) from Shewanella loihica PV-4

 Score = 93.2 bits (230), Expect = 2e-23
 Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 5/175 (2%)

Query: 239 VFNDLTFRERYEELLSRSGRDMLTGVSDRARMELDAPSLVVECLEKRRPVSVLIVDIDHF 298
           V  DL+   +Y+   S++  D LT V++R  +     + +     ++ P++V I DIDHF
Sbjct: 323 VIKDLSDEMQYK---SQANTDPLTKVANRRAINRQLAAAISRSNRQQTPLAVCIFDIDHF 379

Query: 299 KTVNDTFGHLQGDEILREFAAVLKRAVQPLGHLYRFGGEEFVALLPAMTHETALAFSASL 358
           K VND  GHL GD++L+  A +   A++    + R+GGEEFV +L     E A  F+  L
Sbjct: 380 KAVNDKHGHLVGDDVLQRVAKIFSDAIRKTDFVGRWGGEEFVIILEDTDKEGAKHFADKL 439

Query: 359 RVAVLAELQRPD-GSPLTVSIGVATAFEDGQLFRALLSEADAWLYAAKNNGRDQV 412
           R  V    Q  D    +T+S GV+   +D +    L + AD  LY AK +GRD V
Sbjct: 440 RQEVKRRSQGIDFPVAITLSAGVSVYCQDDKQ-DCLFNHADQALYRAKESGRDCV 493