Pairwise Alignments

Query, 497 a.a., ABC transporter, substrate binding protein from Agrobacterium fabrum C58

Subject, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  145 bits (365), Expect = 4e-39
 Identities = 134/486 (27%), Positives = 214/486 (44%), Gaps = 32/486 (6%)

Query: 2   IKHALLTTCAIAG-AFGANAANAGTVTYD-DNYAVKAAWQMASDDSTLGMRVGCYEGLVR 59
           +K+ L      AG +FGA AA+  TV YD D  ++    Q++    TL +    ++ L+R
Sbjct: 4   MKNKLALALIAAGLSFGAMAADI-TVAYDADPVSMDPHEQLSG--GTLQLSHMVFDPLIR 60

Query: 60  IGFDMRLEASLAESWKQTEPKVWEFKLRKGVKFQNGEDFNAAAAVNALTLLLKASVPARA 119
               M  E  LAESW++ + +   F LRKGVKF +G DF A   V     L +++     
Sbjct: 61  FTQKMEFEPRLAESWQRVDNETMRFTLRKGVKFHSGNDFTADDVVWTFNRLKESADFKGI 120

Query: 120 FSPKQIAGVEAVGDDVVKVTTIEPSVLLP--AQLASPATAILAPSAYKDGK----INPIG 173
           F P  +  +  V D  +++ T     L+   A    P  +        DGK    I   G
Sbjct: 121 FEP--LVSLTKVDDYTIEIKTAGTYPLIENVATYIFPMDSKFYTGTTADGKNKAEIVKHG 178

Query: 174 TC--------TGPFEITEVDPNQYMVMKANHGYWGGMPK--LDGGRVNFVPDADTRATQI 223
                     TGPF +T  +    +  + N  YW    K  +D   +  + +  TR   +
Sbjct: 179 NSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKLTLAVIKEDATRVAAL 238

Query: 224 RTGEVQISRLVPPWSIKTIESTKGVKVAAISVPRITELLLN-NSRPPFKDKKVREAVRAA 282
            +G V +   V P   + I+  KGV +  +   R+    +N NS P  KD +VR+A+  A
Sbjct: 239 LSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNSNPALKDVRVRQAIVYA 298

Query: 283 IDAAGIASSIYEEKVKSASMPFAPGQPWAAEEPTSTYDVAKAKSLLKEAGIAPGSLKVTI 342
           I+  GI   + +    +A+     G     E     +D+ KAK L+KEAG   G     I
Sbjct: 299 INNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKPRFDLNKAKELMKEAGYEKGFNLTMI 358

Query: 343 LAYTMKTELKDVAAIIQAQLEEIGIKVDVRVAEYSAIEPDLLAGNFDMVLLSRGYATDVI 402
                    + +A    A L +IGIKVD++    +   P+      DM+++  G+  D  
Sbjct: 359 APNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKCAADMLMI--GWHPDTE 416

Query: 403 EPAGY-----LNADYSC-TGTYNISHYCNEETDKLIKAAYAEVEPAKRYAIYGQIAKKIY 456
           + A +     +  D +   G YN  +Y N E DKL+ AA  E +  KR  +  ++ + +Y
Sbjct: 417 DSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEETDLEKRSTMLKKVEEILY 476

Query: 457 DDAVSV 462
           ++A  V
Sbjct: 477 NEAAFV 482