Pairwise Alignments

Query, 443 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

 Score =  167 bits (423), Expect = 7e-46
 Identities = 111/321 (34%), Positives = 171/321 (53%), Gaps = 19/321 (5%)

Query: 115 QALRQRL-MVSGDLPREAGISSAFDSYVDGALKRFQARHGLPADGVSGEYTTKALNVSAQ 173
           +AL QRL +V+ D        + +D+ ++  +K+FQ  HGL  DGV G  T K LN S  
Sbjct: 211 EALVQRLALVNLDTTSILNDVAYYDASLEKPIKQFQKMHGLQTDGVIGPQTMKWLNTSVT 270

Query: 174 IRLAQLQTNLVRIQSMSGDLGQRHMMVNIPAAAIEAVENERVVLRNTAVVGRASRPTHVI 233
            RLA L  N  RI+          ++VN+P   ++  +  R V  +  VVG+ +RPT V+
Sbjct: 271 ERLALLALNAERIRLWPTQQDSM-IVVNVPGFDMKYWDAGREVFESKVVVGKTTRPTPVM 329

Query: 234 NSKVYEVILNPYWTAPRSIVEKDIVPLMQKDPTYLERNNIRLIDG--KGQEVSPTTVDWF 291
           N+K+  +I+NP W  P  I+ +DI+P++++D  YL  +++ +I G    + + P  +DW 
Sbjct: 330 NTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWE 389

Query: 292 A--PKAPNLMFRQDPGKINAMSSTKINFHNPNNEYMHDTPQQGLFNKLMRFESSGCVRVQ 349
           A  P+      RQ  G  NA+ + K N  N    Y+HDTP + LFN   R  SSGC+RV+
Sbjct: 390 AVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVE 449

Query: 350 NVRDLTSWLLRDTPGWSRQEMERVIASRVNT-PIKLAQEVPVYFVYITAWSAKDGVVQFR 408
           N       LL +  G +  +        V+T  I L + +PV+ +Y T W  ++GV+ +R
Sbjct: 450 NAEKFAQTLLAN-QGITLDDFP------VSTQAIALKKRIPVHIIYQTVW-YEEGVLHYR 501

Query: 409 DDIYGKD----GNAELALNTT 425
           DDIY  D    GN + + N T
Sbjct: 502 DDIYHYDALALGNGDASPNLT 522