Pairwise Alignments

Query, 287 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 279 a.a., 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ from Vibrio cholerae E7946 ATCC 55056

 Score =  243 bits (621), Expect = 3e-69
 Identities = 122/268 (45%), Positives = 180/268 (67%), Gaps = 6/268 (2%)

Query: 1   MNYRHIYHAGNFADVLKHAVLARLVRYLQNKDKAFRVLDTHAGIGLYDLSSEEAQKTGEW 60
           ++YRH +HAGN ADVLKH V + ++  LQ K+K F   DTH+G+G YDL+ E ++KTGE+
Sbjct: 2   LSYRHSFHAGNHADVLKHIVQSLILNSLQQKEKPFVYHDTHSGVGRYDLTHEWSEKTGEY 61

Query: 61  QTGIGKLMEAD-LPAPIAELLEPYLAAVRELNPEGGMQFYPGSPKLARMLFRPQDRLSAM 119
           + GI ++ + D +PA     L+ YL A+R+LN    +++YPGSP++AR   R QDR+   
Sbjct: 62  KQGIARIWQQDNIPAE----LDSYLDAIRQLNQGETLRYYPGSPRVARAHLREQDRMVLT 117

Query: 120 ELHPDDARALSRLFEGDYQVRVTELDGWLSLGAHLPPKEKRGLILVDPPFELENEYQRLA 179
           ELHP D   L + F  D QV + + DG+  L A LPP+E+RGL+L+DPP+EL  EY+ + 
Sbjct: 118 ELHPSDYPLLEQEFHRDRQVSIYKEDGFARLKASLPPQERRGLVLIDPPYELAKEYRDVV 177

Query: 180 DGLNKAYRRFSTGTYCLWYPLKKGAPIRDFHERLQSFDIPKMLCAELSVKSDRLE-GLSG 238
             + ++Y+R++TG Y +WYP+     I D  E LQ  +I K+L  EL V  D  E G++ 
Sbjct: 178 RAIAQSYKRWATGIYAIWYPVVNRCDIDDMLEGLQGLEIRKILQIELGVAPDTNERGMTA 237

Query: 239 SGLIVVNPPYTLKDELHTLLPFLKTVMA 266
           SG+IV+NPP+TL+ ++ T+LPFLK  +A
Sbjct: 238 SGMIVINPPWTLESQMQTILPFLKQAIA 265