Pairwise Alignments

Query, 642 a.a., excinuclease ABC chain C from Agrobacterium fabrum C58

Subject, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

 Score =  418 bits (1075), Expect = e-121
 Identities = 234/620 (37%), Positives = 350/620 (56%), Gaps = 32/620 (5%)

Query: 22  FVKHLPNSPGVYRMFNEAGDVLYVGKARSLKKRVGNYAQGRVHSNRIAQMVRFTTHMEFV 81
           F+K + N PGVYRM+N   +V+YVGKA+ LKKR+ +Y +  + S +   +V     ++  
Sbjct: 10  FLKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVT 69

Query: 82  TTRTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITADNRAPAIFKHRGARARKGDY 141
            T TETEAL+LE N IK+  P++NVLLRDDKS+PYI ++A ++ P +  HRGA+ R+G+Y
Sbjct: 70  VTHTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLSA-HKHPRLSSHRGAKKRRGEY 128

Query: 142 FGPFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTHE-VSDEGY 200
           FGP+  +GAV  T++ +Q+ F +R C D+V+  RTRPCL+YQI RC+GPC    +SD+GY
Sbjct: 129 FGPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGY 188

Query: 201 AELVKEAKDFLSGKSQAVKTAIARQMNEASEDLDFERAAIYRDRLAALSHVQSHQGINPA 260
            E+V   + FL GK   V + +  +M +AS +L FE AA  RD++ A+  VQ  Q ++  
Sbjct: 189 QEIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDD 248

Query: 261 GIEEADVFAIHHEGGISCIQVFFFRTGQNWGNRAYFPKADPSLPGSEILNAFLAQFY--- 317
            +E+ DV     E GI+CI +   R G+  G+R++FPK        E+  +FL+Q+Y   
Sbjct: 249 SLEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSH 308

Query: 318 -DDKPVPKQILLSE-TVEEQELLAAALGEKAGHKVTISVPQRGEKKDITDHVLANAREAH 375
            + + +P +I+L+    EE E L  A+ E AG KVT  V   G +         NA  A 
Sbjct: 309 SEARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAI 368

Query: 376 GRKLAETSSQARLLKGFAETFNLPYVPRRIEIYDNSHIMGTNAVGGMVVAGPEGFVKNQY 435
             K+    + ++  K   E   +  +  R+E +D SH MG + +   VV   EG +K +Y
Sbjct: 369 TTKMNHKMTISQRFKALQEELGMDAI-TRMECFDISHTMGESTMASCVVFNQEGPLKQEY 427

Query: 436 RKFNIKSTDITPGDDFGMMREVMTRRFSRLLKEEGKPDRAQTPTPEEAADLPFPAWPDVI 495
           R++NI  T IT GDD+  M +V+ RR+S+ L                         PD+I
Sbjct: 428 RRYNI--TGITGGDDYAAMAQVLERRYSKQLDSS--------------------KIPDII 465

Query: 496 LIDGGQGQMTAVRAILDEL--GIRDCVTAIGVAKGVDREAGRERFFADGRSDFSLPPRDP 553
            IDGG+GQ+     I+             IG+AKGV R+ G E        +F LP   P
Sbjct: 466 FIDGGKGQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAP 525

Query: 554 VLYFIQRMRDEAHRFAIGSHRARRKKEMVRNPLDEISGIGPGRKRSLLQHFGTAKAVSRA 613
            L+ IQ +RDE+H  AI  HRA+R K    + L+ I G+GP R+++LL++ G  + + RA
Sbjct: 526 ALHLIQHIRDESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRA 585

Query: 614 GLNDLMTVTGISETVARQIY 633
            + ++  V GIS  +A  IY
Sbjct: 586 SVEEIAKVPGISHALAENIY 605