Pairwise Alignments

Query, 389 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 370 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 77.0 bits (188), Expect = 8e-19
 Identities = 88/345 (25%), Positives = 153/345 (44%), Gaps = 32/345 (9%)

Query: 8   ILRRTTQMFLVALLPVLAIIWTIQVLQR-INLVTDTGQSMGSFMALATMI---LPTLIPV 63
           + R   +  L A + VL ++ TI + Q  + ++ D          +AT+I   LP L+ +
Sbjct: 3   VFRYLIREVLKAQIAVLFVLLTIFISQHFVRILADASDGEFPASLIATLIGLNLPYLVVL 62

Query: 64  VLPFALVIGITQIFTTMNNDSELAIIDAAGAPRSVMYRPVLILAAVLSLFSFTITNFIEP 123
           VLP +L +GI      M  ++E+ I+   G     + R  LILA +  LF+  ++ ++ P
Sbjct: 63  VLPLSLFLGILMAHGRMYAENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYVAP 122

Query: 124 PARNSARQMVAAAYADLLSSVIEEKTFRTIQDGLYVQIAQRQGR--ILKGLFVADRRDPN 181
            A     Q++  A ++   + + +  F+   +G  V   +R G+   L+ +FVA   DPN
Sbjct: 123 WAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELEKVFVAQLPDPN 182

Query: 182 FDL----IYYAKEGMI--DESGT-SLTMRDGEVQQKTPDGK-VSIVKFLSYAFDLSTMSE 233
            ++    +  AK G +  D++G+  L + DG   Q +P  K   +++F  Y   +    E
Sbjct: 183 DEIGLTNVVVAKGGRVIEDQNGSQQLQLNDGVRYQGSPQQKDYQMIEFGGYKMQI---KE 239

Query: 234 KQDSEPSLSPGDASLGFLLSPDENNASYKRSPETFRSELHKRLSDWMFAFSFALISLAIA 293
           +Q  E         LG LL  D         PE   +E H RL+  +      LI++ +A
Sbjct: 240 QQVDERRRKLSALPLGELLKID--------GPEAV-AEFHWRLAIPLAIPIMTLIAVPLA 290

Query: 294 -ADSRSHREARLHPMVAALVTAFMLRWLGFYVTNQVKQSAAFIPL 337
             + R  + A++ P V        L + G  V  +       IPL
Sbjct: 291 RVNVRQGKFAKMLPAV-----LLYLGYFGLMVAGRKALQDGVIPL 330