Pairwise Alignments

Query, 468 a.a., DNA repair protein from Agrobacterium fabrum C58

Subject, 478 a.a., DNA repair protein RadA from Synechococcus elongatus PCC 7942

 Score =  383 bits (983), Expect = e-111
 Identities = 218/446 (48%), Positives = 282/446 (63%), Gaps = 20/446 (4%)

Query: 1   MAKAKTQFVCQNCGTVHNRWAGKCEGCGEWNTIVEEDPMGGIGSGPGKV-PKKGRPVTLT 59
           MA++++++VCQNCG    R+ G+C  C  WN++VEE       +    V P + R   L 
Sbjct: 1   MARSRSEYVCQNCGHRAPRYVGRCPACESWNSLVEEAIAPTAKTAIATVLPSRQRRDRLA 60

Query: 60  SLSGEIEEA-----------PRIPTGISELDRATGGGFVRGSAVLIGGDPGIGKSTLLMQ 108
               +   A            RI +G  E DR  GGG V GS VLIGGDPGIGKSTLL+Q
Sbjct: 61  EAPPQAVAAQPLSAIADVSQQRIASGSGEFDRVLGGGLVPGSLVLIGGDPGIGKSTLLLQ 120

Query: 109 AAAALSRRGHRVIYVSGEEAVAQVRLRAQRLGS------ADTDVLLAAETNVEDILATVS 162
            A ALS++   ++YV  EE+  QV+LR QR+ +      AD    L  E +++ I+A + 
Sbjct: 121 TATALSQQ-QPILYVCAEESGQQVKLRWQRIAAHRSPNQADQQFYLLPEIDLDAIVAEL- 178

Query: 163 EGKRPDLIIIDSIQTLWSDTADSAPGTVTQVRTGVQAMIRFAKQTGATMVLVGHVTKEGQ 222
           E  RP + IIDSIQ L+S    SAPG+V QVR    A++R AKQ   T+++VGHVTK+G 
Sbjct: 179 ETLRPPVAIIDSIQALYSPALGSAPGSVAQVRECTAALMRVAKQLTITLLIVGHVTKDGA 238

Query: 223 IAGPRVVEHMVDAVLYFEGDRGHHYRILRTVKNRFGPTDEIGVFEMSDGGLREVSNPSEL 282
           IAGP+V+EH+VD VLYFEGDR   +R+LR+VKNRFG + E+G+FEM D GL EV NPS L
Sbjct: 239 IAGPKVLEHLVDTVLYFEGDRFASHRLLRSVKNRFGASQELGIFEMVDRGLEEVGNPSAL 298

Query: 283 FLGERNEKSPGAAVFAGIEGTRPVLVEVQALVAATSLGTPRRAVVGWDSSRLAMILAVLE 342
           FLG R++ + G A     EGTRP+LVE+QALV+ +S  +PRRA  G + +RL  ILAVLE
Sbjct: 299 FLGSRDQATSGTATIVACEGTRPLLVELQALVSPSSYSSPRRAGTGIEYNRLLQILAVLE 358

Query: 343 AHCGVKLGQHDVYLNVAGGYRISEPAADMAIASALVSSLAGLALPADCVYFGEISLSGAV 402
              G+ L + D Y+  AGG  ++EPAAD+ IA ALV+S     L  D V  GEI L G V
Sbjct: 359 KRLGLPLSKFDAYVASAGGLNVAEPAADLGIAIALVASFRDRCLRPDTVLIGEIGLGGQV 418

Query: 403 RPVAHTVQRLKEAEKLGFSAALLPSG 428
           RPV+    RLKEA KLGF  ALLP G
Sbjct: 419 RPVSQVELRLKEAAKLGFQRALLPKG 444