Pairwise Alignments

Query, 628 a.a., ABC transporter, nucleotide binding/ATPase protein from Agrobacterium fabrum C58

Subject, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

 Score =  293 bits (749), Expect = 2e-83
 Identities = 203/588 (34%), Positives = 302/588 (51%), Gaps = 40/588 (6%)

Query: 29  EGRWDLKMRVIWATVFLIVAKLVLIAVPYFFKWATDAL--------------NGKLDMAG 74
           E  W    R +W  + L  A LV+  +      A D                N + +   
Sbjct: 7   ESNWQTFKR-LWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLR 65

Query: 75  LVPAFLLGAVALVIAYNLTRLIQVGLNQLRDSLFAS-VGQHAVRQLAYRTFVHMHRLSLR 133
           ++P  +LG + +            GL+    S   S V  + V Q+  R F H   + +R
Sbjct: 66  ILPFMILGLMFVR-----------GLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVR 114

Query: 134 FHLERKTGGL-SRVI--ERGTKGIETIVRFTILNTAPTFIEFLLTAIIFWASYGFSYVLV 190
           F  +  TGGL SR+        G  +    +I+    + I  L   ++FW S+  S VL+
Sbjct: 115 FFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLL--TLMFWNSWQLSLVLI 172

Query: 191 TVVTVWAYIWFTVRASNWRIGIRRAMNDSDTDANTKAIDSLLNFETVKYFGNEEMEARRF 250
            V  V A+    V     +I   R M  +     + A   L   + V  +G +E+E +RF
Sbjct: 173 VVAPVVAFAISFVSKRFRKIS--RNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRF 230

Query: 251 DVAMERYEKSAISIWTSLGWLNFGQGVIFGIGSTIMMVMSALAVQRGEQTIGDFVFVNAL 310
           D       +  + + ++    +    +I  +    ++ ++++   R E T G F  V + 
Sbjct: 231 DKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSA 290

Query: 311 LLQLSVPLNFIGFVYREIRQGLTDIEQMFDLLEVEAEVTDRPDAKPLAAGP-GAISFRDV 369
           +  L  PL  +  V  E ++G+   + +F L+++E   T+R + K  A    G +  +DV
Sbjct: 291 MFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLE---TERDNGKYEAERVNGEVDVKDV 347

Query: 370 HFAYD-PERPILKGVSFDVPAGKTVAIVGPSGAGKSTISRLLYRFYDIQEGAVTIDGQDI 428
            F Y   E+P L  VSF +P GKTVA+VG SG+GKSTI+ L  RFYD+  G++ +DG D+
Sbjct: 348 TFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDV 407

Query: 429 RDVTQKSLRSMIGMVPQDTVLFNDTLAYNIRYGRPSA-TDEELKAAADAAQISAFIGKLP 487
           RD    +LR    +V Q+  LFNDT+A NI Y      T E+++ AA  A    FI  +P
Sbjct: 408 RDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMP 467

Query: 488 DGYATMVGERGLKLSGGEKQRVAIARTILKAPPILILDEATSALDTHTEQEIQSALDIVS 547
            G  T++GE G  LSGG++QRVAIAR +L+  P+LILDEATSALDT +E+ IQ+ALD + 
Sbjct: 468 QGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ 527

Query: 548 KNRTTLVIAHRLSTVIHADEIIVLKEGLIAERGTHASLMAHDGLYASM 595
           KN+T LVIAHRLST+  ADEI+V+ EG I ERG HA L+A DG YA +
Sbjct: 528 KNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQL 575