Pairwise Alignments

Query, 628 a.a., ABC transporter, nucleotide binding/ATPase protein from Agrobacterium fabrum C58

Subject, 721 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

 Score =  255 bits (652), Expect = 4e-72
 Identities = 173/569 (30%), Positives = 297/569 (52%), Gaps = 34/569 (5%)

Query: 43  VFLIVAKLVLIAVPYFFKWATDALNGKLDMAGLVPAFLLGAVALVIAYNLTRLIQVGLNQ 102
           ++ I  ++  +  P  F+   D +        LV   L     L +A     + +   + 
Sbjct: 172 LYAIALQIFALVSPMLFENVIDKV--------LVGRSLSSLHVLALAMLALAIAEPAYSY 223

Query: 103 LRDSLFASVGQHAVRQLAYRTFVHMHRLSLRFHLERKTGGLSRVIERGTKGIETIVRFTI 162
           LR+++F  +      +L+ R + H+  L L +  +R+TG   ++I R  + +  I +F  
Sbjct: 224 LRNTVFGHLASQVNAELSGRLYRHLVGLPLTYFKQRQTG---QIIAR-VREMAQIRQFLT 279

Query: 163 LNTAPTFIEFLLTAIIFWASYGFSYVLVTVVTVWAYIWFTVRASNWRIG---IRRAMN-- 217
            +T    ++ +   +     + ++  L  +V     I+F +    W I    IR+ +   
Sbjct: 280 GSTLMLLLDLIFVTVFLAVMFHYASTLTWLVIGSLVIYFVL----WLIAGPLIRKKVESE 335

Query: 218 -DSDTDANTKAIDSLLNFETVKYFGNEEMEARRFDVAMERYEKSAISIWTSLGWLNFGQG 276
            +SD +A T   +++   ET+K    E     ++   + +    +     S   L  GQ 
Sbjct: 336 YESDANATTFLTEAVTGIETIKTTATEHRFLEQWQRILSQQLNRSFDAQKS--GLIAGQA 393

Query: 277 V--IFGIGSTIMMVMSALAVQRGEQTIGDFVFVNALLLQLSVPLNFIGFVYREIRQGLTD 334
           +  +  + + +++     AV +GE T G  V  N L   ++ P+  +  ++++ +  L  
Sbjct: 394 IALVQKLTAALLLWWGVSAVLKGEITPGQLVAFNMLAGHVTQPVLRLAQIWQDFQHTLIA 453

Query: 335 IEQMFDLLEVEAEVTDRPDAKPLAAGP---GAISFRDVHFAYDPERP-ILKGVSFDVPAG 390
           + ++ D+L+   E + +     LA+ P   G I F ++ F Y  + P +L  +S  +  G
Sbjct: 454 LRRVGDILDEPRENSKQG----LASVPELDGGIEFSNIRFRYHQDAPEVLANLSLKIKPG 509

Query: 391 KTVAIVGPSGAGKSTISRLLYRFYDIQEGAVTIDGQDIRDVTQKSLRSMIGMVPQDTVLF 450
           + + + GPSG+GKST++RLL R Y  Q G V +DG D+      SLR  + +V Q+++LF
Sbjct: 510 QFIGVTGPSGSGKSTLTRLLQRLYVPQHGQVLVDGMDLAIADPVSLRRNMSVVLQESILF 569

Query: 451 NDTLAYNIRYGRPSATDEELKAAADAAQISAFIGKLPDGYATMVGERGLKLSGGEKQRVA 510
           + ++A NIR  +P A+DEE++ AA  A   AFI  LP G+   VGE+G  LSGG++QR+A
Sbjct: 570 SGSVADNIRLCKPQASDEEIRHAAQLAGALAFIEGLPHGFNQPVGEKGAALSGGQRQRIA 629

Query: 511 IARTILKAPPILILDEATSALDTHTEQEIQSALDIVSKNRTTLVIAHRLSTVIHADEIIV 570
           +AR +L  P IL+LDEATSALD ++E  I S +D + + RT + IAHRL+T+ HAD I V
Sbjct: 630 LARALLVNPRILLLDEATSALDYNSEASIMSNMDEICRGRTVISIAHRLNTIRHADNIFV 689

Query: 571 LKEGLIAERGTHASLMAHDGLYASMWSRQ 599
           L +G +AE GTH  L+A  GLYA +W++Q
Sbjct: 690 LDKGQVAESGTHEELLAQQGLYAKLWTQQ 718